CN187834

Overview
NameCN187834
Unique NameCN187834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10824 contig Csv1_Contig10824:85..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN187834 vs. ExPASy Swiss-Prot
Match: Y2992_ARATH (Uncharacterized protein At2g39920 OS=Arabidopsis thaliana GN=At2g39920 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.819e-24
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = -2 
Query:   74 MSAYAHQMXXXXXXXXXXXXXXXEHGSQYTVESGFYMTTFAAVIFXXXXXXXXXXXXXXXXXLAVMLQSCQNRSSGVVELTKSSGDNNYCKLFALHAELNSLEADN-LPEICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDD 547
            MSAY H M                 GS+Y++ESG YMT+ AA IF                 L+ MLQSC+NR+  +VE  +      YCK+ +LH++LNSL+ ++ LP +CR +A+  IK+G + R+LN +IQ+  +YF T+ P  +  DVV++DIDD
Sbjct:    1 MSAYTHPMERELSGLSSRGNSEL--GSRYSIESGCYMTSLAASIFIASLVTFGVLMITLLIALSTMLQSCENRNIAIVEAQRLDESFGYCKILSLHSQLNSLDEESELPLLCRDVALHRIKQGIYLRELNFTIQMALTYFQTIKPMNDNCDVVVIDIDD 157
The following BLAST results are available for this feature:
BLAST of CN187834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2992_ARATH2.819e-2438.99Uncharacterized protein At2g39920 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187834 ID=CN187834; Name=CN187834; organism=Citrus sinensis; type=EST; length=794bp
CTTTTTTTGCTCAGGCACGAGAAAATTACCTGTCTATTAATAGATTACTG
TCCTTTGAACTTGAAGCGAAAATATCATCTATGTCCATTAAAACTACATC
TAGACCATTGTATGATGGTGTAAGAGTATTAAAGTAGCTTTCAACAATCT
GTATTGAAAGGTTTAGATCTCTAGCAAATTGTCCTTCTTTGATGTATCGA
ATAGCAAGACCCCTGCAAATTTCTGGCAAGTTATCTGCTTCCAAGCTGTT
AAGCTCGGCATGTAGAGCAAATAGCTTGCAATAATTGTTATCACCGCTTG
ATTTCGTAAGTTCAACAACTCCTGAACTCCTATTTTGACAGGATTGCAAC
ATGACAGCCAATGTAACCAGCAAGGTTATTAACAGAACTCCAACTGTTAT
AAGACCACCAATGAAGATTACTGCAGCAAAAGTTGTCATGTAGAACCCGG
ACTCAACCGTATATTGGCTTCCATGCTCAGAGCCTCCTCTACTCGAGAGA
CTCTGGGAGGAGAGCTGCCGCTCCATTTGATGAGCGTAAGCTGACATTTT
GGTAATCTAACCAGCATTCACCAGCTCAAGTTAAAAGCTAGGATATCTAA
AGATCCCTTTGGGTGATAGAAGGGTCACAATAACATTCATCTACCATGCT
ACGAGCCAACAACAGCATCTCATCTCAGCTTCTTTTGCCGATCATTATTA
AACAATTAGAAGCCACTAGCCATCTCCGTACACAATTATGTAAAATAAAC
ACAAAAATCTCATCTGCGTCGACAGAAAAAAAAAAATCCAACTG
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