CK938683

Overview
NameCK938683
Unique NameCK938683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2126 contig Csv1_Contig2126:1..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938683 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 49/145 (33.79%), Postives = 85/145 (58.62%), Query Frame = 2 
Query:   77 SEAPPT-HYTVKIQSFSLLLKNSVEKYETGDFEAGGYKWKLVMYPAGNKSKNVKEHISVCLAMENTSSLQHGWEVYAVFRLFLLDQDKDNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 508
            +E PPT  +T  I +FS   + +  K+ +  F  GGYKW+++++P GN   NV +H+S+ L + + +SL +GW  YA F L +++Q    + + ++    + +F+  + +WGF  F+P+    D S G+L+ DT +  AEV V K
Sbjct:   49 AEDPPTLKFTWTIPNFS---RQNTRKHYSDVFVVGGYKWRILIFPKGN---NV-DHLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET---QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183
[Close]
BLAST of CK938683 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 43/143 (30.07%), Postives = 82/143 (57.34%), Query Frame = 2 
Query:   80 EAPPTHYTVKIQSFSLLLKNSVEKYETGDFEAGGYKWKLVMYPAGNKSKNVKEHISVCLAMENTSSLQHGWEVYAVFRLFLLDQDKDNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 508
            + P   +T  I  F+ L   +  K+ +  F  GGYKW+++++P GN   NV +H+S+ L + + ++L +GW  Y+ F L +++Q  + + I ++    + +F+  + +WGF  F+P+    + + G+L+ DT +  AEV V K
Sbjct:   50 DPPSLKFTWTIPMFTRL---NTRKHYSDVFVVGGYKWRILIFPKGN---NV-DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET---QHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182
The following BLAST results are available for this feature:
BLAST of CK938683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP12_ARATH5.999e-1733.79Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH1.251e-1430.07Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004439_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938683 ID=CK938683; Name=CK938683; organism=Citrus sinensis; type=EST; length=817bp
GGGGATCGCTACAAACAATTCTGTCAGGAATTTTGTTGCCATGGGTGACG
AAATAGATGGGTTCACAAGATCAGTTTCGGAAGCGCCACCAACTCATTAC
ACAGTCAAAATACAATCTTTTTCTTTGCTTTTGAAAAATTCAGTGGAGAA
ATATGAAACCGGGGATTTTGAAGCTGGAGGCTACAAATGGAAATTGGTTA
TGTACCCTGCTGGAAATAAAAGCAAGAACGTGAAAGAACACATTTCTGTC
TGCCTGGCAATGGAAAACACAAGCTCACTCCAGCATGGTTGGGAGGTCTA
TGCAGTTTTCAGATTGTTTTTGCTTGATCAAGACAAGGACAACTTCTTGA
TACTTCAAGATGCCATGGGAGCCGAAAGGCGGTTTCATAGGTTAAAGCGT
GAATGGGGATTTGATGAATTTATCCCCATTAAAGCTTTTAATGATGCTTC
TAATGGATTCCTCTTGGAGGACACGTGTGTGTTTGGAGCAGAAGTATTTG
TTAGTAAAGAAAGAAGCACAGGTAAAGGAGAGTGCTTATCAATGATCAAA
GATGCACCCAGTATTAAGCACGTCTGGAGGATCGAAGACTTCTCAAAGTT
ACGCTCAGAATGTTGCGACTCACAAGTATTCAGTTCTGGAGACCAGAAAT
GGCAGATACAACTATATCCTAAGGGACGGCGCCATGGAACCGGCACTCAC
CTAGCTGTGTACTTGGCTCTGGCAGATTCAACAACTCTCACTCCAGGTTC
CAAAATTTATGCCGAGTTCACTTTGCGACTCCTGGATCAGGCGCAGGCCC
GGCANNTAGCTGGTAAA
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