CN187827

Overview
NameCN187827
Unique NameCN187827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5528 contig Csv1_Contig5528:166..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187827 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.626e-80
Identity = 149/218 (68.35%), Postives = 176/218 (80.73%), Query Frame = -2
Query:  155 KTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDAS--DGGVQENGIEFPPQMVQ-PSV--ASSRNTRSTSFKTRLGLLSGRSLVACTL 793
            KTP+CTN+GLA VAERCKLLRKLHIDGWK NRIGDEGLI VAK C NLQELVLIGVNPT++SLE + SNC NLERLALCGSDTVGD E+ CIA KC+AL+KLCIK+CP++D G++AL  GCPNL+KVKVKKCR VTT+GAD LR RR  +VVNLD+ E    + S  +GG QEN +EFPP  +Q P++  AS   +RS+SFK RLG LS R+ V+C L
Sbjct:  325 KTPDCTNVGLALVAERCKLLRKLHIDGWKTNRIGDEGLIVVAKYCWNLQELVLIGVNPTKLSLEAIVSNCLNLERLALCGSDTVGDTELCCIAEKCLALRKLCIKNCPITDDGIKALGNGCPNLLKVKVKKCRGVTTQGADLLRKRRALLVVNLDAPETPIVEGSVGEGGAQENAVEFPPSRLQIPTIGLASGSTSRSSSFKLRLGFLSQRNFVSCAL 542          
BLAST of CN187827 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.582e-75
Identity = 143/219 (65.30%), Postives = 166/219 (75.80%), Query Frame = -2
Query:  158 KTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASD----GGVQENGIEFP---PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACT 793
            KTPECTN GLAA+AE+CK LRKLHIDGWKAN IGDEGL+AVAK C  LQELVLIGVNPT +SL +LA+ C NLERLALCG DT GD E+SCIAAKC AL+KLCIK+CP+SD G+E LA GCP L KVK+KKC+ V    ADWLR  R  + VN D+ E EH++A+     GG QENGIEFP    Q++  S+ASS   RS  FK+ +GL SG SLV CT
Sbjct:  292 KTPECTNFGLAAIAEKCKRLRKLHIDGWKANLIGDEGLVAVAKFCSQLQELVLIGVNPTTLSLGMLAAKCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCPISDVGIENLANGCPGLTKVKIKKCKGVLGGCADWLRTVRPMLSVNADTMEQEHEEAASNDVVGGSQENGIEFPQLNSQIMASSIASSSRNRSGYFKSGIGLFSGMSLVPCT 510          
BLAST of CN187827 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.517e-67
Identity = 132/219 (60.27%), Postives = 158/219 (72.15%), Query Frame = -2
Query:  158 KTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENGIEFPPQM----VQPSVASSR---NTRSTSFKTRLGLLSGRSLVACT 793
            KTPEC+N GL  VAERCKLLRKLHIDGW+ NRIGDEGL++VAK C NLQELVLIGVN T +SL  +ASNC+ LERLALCGS T+GD EI+CIA KC AL+K CIK CPVSD G+EALA GCPNLVK+KVKKC+ VT E  DWLR +R  +VV++D  E E     DG V E  +E P       +   + SS     +R    +++LG L+GR+LV CT
Sbjct:  296 KTPECSNFGLIYVAERCKLLRKLHIDGWRTNRIGDEGLLSVAKHCLNLQELVLIGVNATHMSLAAIASNCEKLERLALCGSGTIGDTEIACIARKCGALRKFCIKGCPVSDRGIEALAVGCPNLVKLKVKKCKVVTGEIGDWLREQRRTLVVSMDGDETEAVVVVDGEV-ETVVEEPRVAQAGGIVAEIGSSNGGGGSRLAMIRSKLGFLAGRNLVTCT 513          
BLAST of CN187827 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.208e-64
Identity = 130/221 (58.82%), Postives = 156/221 (70.59%), Query Frame = -2
Query:  155 KTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGG---VQENGI--EFPPQMVQP---SVASSRNTRSTSFKTRLGLLSGRSLVACTL 793
            KTP+C+NLGLA+V ERCKLLRKLHIDGW+  RIGD+GL++VAK C NLQELVLIGV+ T +SL  +ASNC+ LERLALCGS T+GD EI CIA KCV L+K CIK C +SD G++ALA GCP LVK+KVKKC  VT E  +WLR RR  +VV++D  E       DGG   V E  +  E PP +       VA          KT+LGLL+GR+LVACTL
Sbjct:  290 KTPDCSNLGLASVVERCKLLRKLHIDGWRVKRIGDQGLMSVAKHCLNLQELVLIGVDATYMSLSAIASNCKKLERLALCGSGTIGDAEIGCIAEKCVTLRKFCIKGCLISDVGVQALALGCPKLVKLKVKKCSLVTGEVREWLRERRMTLVVSMDDDETNGVGLVDGGDQRVLETVVEEEAPPVIDGDGGLGVAGGGRLGLAILKTKLGLLAGRNLVACTL 510          
BLAST of CN187827 vs. ExPASy Swiss-Prot
Match: FBL4_ARATH (F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = -2
Query:  371 TNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP-VSDHGMEALAGGCPNLVKVKVKKCRAVTTEGAD 778
            T+L L AV   CKLL  L++D   +  I D+GLIAVA+ C  L+ L L  V+ T V+   +   C +LERLAL       D  +  I      LK L +  C  VS  G+EA+A GC  L +V++  C  + T G +
Sbjct:  232 TDLSLEAVGSHCKLLEVLYLD---SEYIHDKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIE 365          

HSP 2 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = -2
Query:  389 GLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVS-LEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSC-PVSDHGMEALAGGCPNLVKVKVKKCRAV 769
            GL A+A  CK L ++ I+G   + IG  G+ A+ K CP L+EL L+       S L+ +   C++LE L L     +GD+ +  IA  C  LKKL I+ C  + + G+ ++   C +L ++ ++ C  V
Sbjct:  337 GLEAIAHGCKELERVEING--CHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKV 463          
The following BLAST results are available for this feature:
BLAST of CN187827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FBL8_ARATH1.626e-8068.35Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
FB37_ARATH4.582e-7565.30F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
SKIP2_ARATH3.517e-6760.27F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FBL16_ARATH6.208e-6458.82F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
FBL4_ARATH2.645e-1437.96F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187827 ID=CN187827; Name=CN187827; organism=Citrus sinensis; type=EST; length=794bp
CTTTTATAACACACAGCACAGAATTTAATTAAATACAAGAAAGGCTGTAA
ATCCTTTTATCCAACAGAAAATAATGTAAACAAAGTTGAAGAACACATTT
CAGTTTTTATAATTAACTATTTCTTGAACTGCTATTACCACTTGACCACC
TCCTCAAAGTGCAAGCAACCAAACTCCGCCCACTCAATAGCCCTAGCCTT
GTCTTGAATGAGGTTGATCGAGTATTCCTACTCGATGCAACACTAGGCTG
CACCATTTGGGGAGGAAACTCAATACCGTTCTCTTGAACTCCGCCATCAC
TAGCATCCTGATGTTCAGCCTCACCGCTATCTAAATTCACAACAACATAT
TCCCTCCTTGCTCTCAACCAGTCCGCGCCTTCAGTCGTCACTGCTCGGCA
CTTCTTCACCTTCACTTTCACCAAATTCGGACACCCACCAGCCAGAGCTT
CCATTCCATGATCAGAAACGGGACAGCTCTTGATACAAAGCTTCTTTAAA
GCAACACATTTTGCAGCTATGCAAGATATTTCCACATCTCCAACAGTGTC
ACTACCACACAAGGCTAATCGCTCTAGATTTTGACAATTTGAAGCCAAAA
CTTCCAGACTCACTCTGGTAGGATTCACGCCAATAAGAACTAACTCTTGC
AAATTAGGGCAACACTTTGCTACAGCTATTAGTCCTTCATCGCCAATACG
ATTAGCTTTCCATCCATCAATGTGGAGTTTTCTCAATAGTTTACATCGCT
CGGCTACAGCGGCGAGTCCAAGATTTGTGCACTCTGGAGTTTTG
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