CN187819

Overview
NameCN187819
Unique NameCN187819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2534 contig Csv1_Contig2534:596..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187819 vs. ExPASy Swiss-Prot
Match: OCS1_MAIZE (Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = -3
Query:  420 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSILRAQLLELTQRLDSLNDILNFINTSSGI 686
            R+ KR  SNRESARRSR+RKQ+HLD+L+ +V +L+ +N ++          Y  +E EN++LRA+  EL  RL S+N++L  +   SG+
Sbjct:   26 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVLRLVEEFSGV 114          
The following BLAST results are available for this feature:
BLAST of CN187819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OCS1_MAIZE8.866e-1643.82Ocs element-binding factor 1 OS=Zea mays GN=OBF1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187819 ID=CN187819; Name=CN187819; organism=Citrus sinensis; type=EST; length=709bp
GAGCGTTTTTTTTTTTGAATAAAATCTATTTACATTAAAAACCACCTAGA
CCACATACATTAATTCATTCAGAGCCCTTCACAGCATATTTATAGTGGGC
AGATTTATTTTACTCCAATTGCATGTGCCATTGATTCTCTCATGTCCTCA
CAAACTGGAAACTGATATCATAATATATAATAATAAAAAAACTCACATTA
AAGAAACACCAATAAAAAACGCCAATCAAGAGAGACACCGAGGGCAGAAT
TGACCAAATATGAACCACAGGATGATGATCCTGATCAATAGTATTGAAAG
ATATCTGGAGAAGCCATGATGGGTTGGTTCAGAAACATGGTGTTGGTGTC
CATTGGGTTGTTGTTAATGAAATCATCATGGGCATGTGGGTGATGATGAT
GCTGATCAGTAGTGTCGAGAATCCCACTGCTTGTGTTAATAAAATTCAGG
ATGTCGTTCAGAGAGTCAAGCCTTTGAGTAAGTTCCAATAACTGAGCCCT
TAAAATGGAATTCTCAGACTCAATGTTCATGTAGTGCTGGGTGGTGATGT
TGACGCTTGTCAAGATTTGGTTATTCTCTTTCCTTAGCTGATCCACTTGG
GCAATCAAATCATCCAAGTGCTTCTGTTTTCTCATCCTCGATCTCCTGGC
TGATTCCCGATTCGATTGCATTCTCTTCCTCTTTCTCTGATCCATCGCTA
ACTGTAAAT
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