CN187818

Overview
NameCN187818
Unique NameCN187818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM_HEVBR (Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.230e-17
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = -1
Query:  173 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQKECP 325
            K PTLVPLLGIDV  HAY L YKNV+PD+LKNIW V  WKY S+V+ KECP
Sbjct:  181 KGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYAKECP 231          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM_CAPAN (Superoxide dismutase [Mn], mitochondrial OS=Capsicum annuum GN=SODA PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.574e-16
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = -1
Query:  173 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQKECP 325
            K P LVPLLGIDV  HAY L YKNVKPD+LKNIW V  WKY ++V++KECP
Sbjct:  178 KGPNLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWKVINWKYAAEVYEKECP 228          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM_PRUPE (Superoxide dismutase [Mn], mitochondrial OS=Prunus persica GN=SOD PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.983e-16
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = -1
Query:  173 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQKECP 325
            K PTLVPLLGIDV  HAY L YKNV+PD+LKNIW V  WKY S+V++KE P
Sbjct:  178 KGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESP 228          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM_NICPL (Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.969e-15
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = -1
Query:  173 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQKECP 325
            K   LVPLLGIDV  HAY L YKNV+PD+LKNIW V  WKY ++V++KECP
Sbjct:  178 KGANLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYANEVYEKECP 228          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM_PEA (Superoxide dismutase [Mn], mitochondrial OS=Pisum sativum GN=SODA PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  179 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQKE 325
            K  +LVPLLGIDV  HAY L YKNV+PD+LKNIW V  WK+ S+V++KE
Sbjct:  183 KGASLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKHASEVYEKE 231          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM_ARATH (Superoxide dismutase [Mn], mitochondrial OS=Arabidopsis thaliana GN=SODA PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  179 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQKE 325
            K  +LVPL+GIDV  HAY L YKNV+P++LKN+W V  WKY S+V++KE
Sbjct:  181 KGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKE 229          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM4_MAIZE (Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays GN=SODA.3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = -1
Query:  185 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQ 325
            K  +LVPLLGIDV  HAY L YKNV+PD+L NIW V  WKY  +V++
Sbjct:  183 KGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 229          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM3_MAIZE (Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays GN=SODA.2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = -1
Query:  185 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQ 325
            K  +LVPLLGIDV  HAY L YKNV+PD+L NIW V  WKY  +V++
Sbjct:  183 KGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 229          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM2_MAIZE (Superoxide dismutase [Mn] 3.2, mitochondrial OS=Zea mays GN=SODA.1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = -1
Query:  185 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQ 325
            K  +LVPLLGIDV  HAY L YKNV+PD+L NIW V  WKY  +V++
Sbjct:  182 KGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 228          
BLAST of CN187818 vs. ExPASy Swiss-Prot
Match: SODM1_MAIZE (Superoxide dismutase [Mn] 3.1, mitochondrial OS=Zea mays GN=SODA.4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = -1
Query:  185 KAPTLVPLLGIDVGAHAYSLPYKNVKPDFLKNIWTVTTWKYVSDVFQ 325
            K  +LVPLLGIDV  HAY L YKNV+PD+L NIW V  WKY  +V++
Sbjct:  185 KGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 231          
The following BLAST results are available for this feature:
BLAST of CN187818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SODM_HEVBR9.230e-1772.55Superoxide dismutase [Mn], mitochondrial OS=Hevea ... [more]
SODM_CAPAN1.574e-1670.59Superoxide dismutase [Mn], mitochondrial OS=Capsic... [more]
SODM_PRUPE5.983e-1670.59Superoxide dismutase [Mn], mitochondrial OS=Prunus... [more]
SODM_NICPL2.969e-1566.67Superoxide dismutase [Mn], mitochondrial OS=Nicoti... [more]
SODM_PEA2.779e-1365.31Superoxide dismutase [Mn], mitochondrial OS=Pisum ... [more]
SODM_ARATH8.086e-1361.22Superoxide dismutase [Mn], mitochondrial OS=Arabid... [more]
SODM4_MAIZE1.168e-1161.70Superoxide dismutase [Mn] 3.4, mitochondrial OS=Ze... [more]
SODM3_MAIZE1.168e-1161.70Superoxide dismutase [Mn] 3.3, mitochondrial OS=Ze... [more]
SODM2_MAIZE1.168e-1161.70Superoxide dismutase [Mn] 3.2, mitochondrial OS=Ze... [more]
SODM1_MAIZE1.168e-1161.70Superoxide dismutase [Mn] 3.1, mitochondrial OS=Ze... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187818 ID=CN187818; Name=CN187818; organism=Citrus sinensis; type=EST; length=325bp
GGGATACACAAGTAACACTCCCTGGGAAAGAAAGGGGGGCTGGCCACACT
TGCAAATTATCCTTTTATTGTCGCTTCAGCGGGAAAAGCTGCGAGGGTAT
TCCCCTCTTGAACCCCAAAGAAAACCCAAATCAAACAAAGAACTCCCTGG
TCAAGGAAAAACTCCAAGCTTAAGGGCATTCTTTCTGAAACACATCACTA
ACATACTTCCAGGTCGTTACGGTCCAAATGTTTTTCAAAAAATCTGGTTT
GACATTCTTGTACGGGAGGGAGTATGCATGCGCCCCAACATCTATACCAA
GCAAAGGAACCAAAGTTGGGGCTTT
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