CN187812

Overview
NameCN187812
Unique NameCN187812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:721..1439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.276e-94
Identity = 172/176 (97.73%), Postives = 174/176 (98.86%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTTTAEREIVRD+KEKLAYVALDYEQELETAKSSSSVEKNYELPDGQ+ITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  202 FTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.843e-94
Identity = 170/176 (96.59%), Postives = 175/176 (99.43%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTTTAEREIVRD+KEKLAY+ALDYEQELETAKSSSSVEK+YELPDGQ+ITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  202 FTTTAEREIVRDIKEKLAYIALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 344.739 bits (883), Expect = 2.843e-94
Identity = 170/176 (96.59%), Postives = 175/176 (99.43%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTTTAEREIVRD+KEKLAY+ALDYEQELETAKSSSSVEK+YELPDGQ+ITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  202 FTTTAEREIVRDIKEKLAYIALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.713e-94
Identity = 169/176 (96.02%), Postives = 176/176 (100.00%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTT+AEREIVRDMKEKLAYVALDYEQELETAKSSS+VEK+YELPDGQ+ITIGAERFRCPEVLFQPSL+GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  202 FTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.713e-94
Identity = 169/176 (96.02%), Postives = 176/176 (100.00%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTT+AEREIVRDMKEKLAYVALDYEQELETAKSSS+VEK+YELPDGQ+ITIGAERFRCPEVLFQPSL+GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  182 FTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT1_PEA (Actin-1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 168/176 (95.45%), Postives = 174/176 (98.86%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTT+AEREIVRD+KEKLAYVALDYEQELETAKSSSS+EKNYELPDGQ+ITIGAERFRCPEVLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  201 FTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 4.106e-93
Identity = 167/176 (94.89%), Postives = 174/176 (98.86%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTT+AEREIVRD+KEKLAYVALDYEQELETAKSSSS+EKNYELPDGQ+ITIGAERFRCPEVLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPER+YSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  201 FTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERRYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.146e-93
Identity = 165/176 (93.75%), Postives = 175/176 (99.43%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTTTAEREIVRD+KEKLAY+ALDYEQELET+K+SSS+EK+YELPDGQ+ITIGAERFRCPEVLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  202 FTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.560e-92
Identity = 165/176 (93.75%), Postives = 174/176 (98.86%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTTTAEREIVRDMKEKL+Y+ALDY+QE+ETAK+SSSVEK+YELPDGQ+ITIGAERFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  202 FTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187812 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.560e-92
Identity = 165/176 (93.75%), Postives = 174/176 (98.86%), Query Frame = 3 
Query:    6 FTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 533
            FTTTAEREIVRDMKEKL+Y+ALDY+QE+ETAK+SSSVEK+YELPDGQ+ITIGAERFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  202 FTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of CN187812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT7_ARATH1.276e-9497.73Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT3_ORYSJ2.843e-9496.59Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI2.843e-9496.59Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT13_SOLTU3.713e-9496.02Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU3.713e-9496.02Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
ACT1_PEA1.843e-9395.45Actin-1 OS=Pisum sativum PE=2 SV=1[more]
ACT2_PEA4.106e-9394.89Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT_GOSHI9.146e-9393.75Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT1_ORYSJ1.560e-9293.75Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI1.560e-9293.75Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187812 ID=CN187812; Name=CN187812; organism=Citrus sinensis; type=EST; length=719bp
GAGGGTTTACCACCACAGCCGAACGGGAAATTGTCCGTGACATGAAGGAG
AAGCTTGCTTATGTTGCCCTAGACTATGAGCAAGAACTTGAGACTGCCAA
GAGCAGCTCATCTGTTGAGAAGAACTATGAGCTGCCTGATGGCCAGATCA
TCACCATTGGAGCTGAAAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCA
TCTCTCATCGGAATGGAAGCTGCTGGTATTCATGAGACTACCTACAACTC
CATCATGAAGTGTGATGTGGATATTAGAAAGGATCTGTATGGTAACATTG
TTCTCAGTGGGGGTTCAACTATGTTCCCTGGTATTGCCGACCGTATGAGC
AAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGC
TCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCAT
CCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAG
TCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCT
TGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTT
CGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGATGGGGCCATTG
AAGGAGGCATATCTCGATATTGATGTTATTATACAAGCTTCTTACAGCGT
TTGAGGGGGGCTTATTTCT
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