CK938651

Overview
NameCK938651
Unique NameCK938651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:503..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.406e-65
Identity = 118/145 (81.38%), Postives = 133/145 (91.72%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKALNAA 438
            DVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAG++K+ +QLD EVHRKYI+GGHVAAYMRTLMEDEPEKYQSHF EY+K+GIEAD LE LYKKVHAAIRA+P  KKS+K  P  HKRYNLKKLTY+ERKARLVERL ALN+A
Sbjct:  146 DVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSA 290          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.557e-63
Identity = 111/145 (76.55%), Postives = 130/145 (89.66%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKALNAA 438
            DVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF KD KQLD+++HRKYIYGGHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN++
Sbjct:  147 DVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.118e-62
Identity = 111/145 (76.55%), Postives = 130/145 (89.66%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKALNAA 438
            DVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF KD KQLD+++HRKYIYGGHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN++
Sbjct:  147 DVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.118e-62
Identity = 111/145 (76.55%), Postives = 130/145 (89.66%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKALNAA 438
            DVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF KD KQLD+++HRKYIYGGHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN++
Sbjct:  147 DVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 9.461e-62
Identity = 108/145 (74.48%), Postives = 130/145 (89.66%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKALNAA 438
            DVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF K++KQLDAE+HR YIYGGHV+ YM+ L EDEPEK Q+HF  Y+K+G+EA+++EE+YKKVHAAIRA+PN KK+EK  P  HKRYNLKKLTYEERK +L+ER+KALN A
Sbjct:  146 DVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGA 290          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.108e-61
Identity = 109/145 (75.17%), Postives = 129/145 (88.97%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKALNAA 438
            DVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF K++KQLDAE+HR YIYGGHV+ YM+ L EDEPEK Q+HF  Y+K+G+EA+++EELYKKVHAAIRADPN KK+ K  P  HKRYNLKKLTYEERK +L+ER+KALN A
Sbjct:  146 DVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGA 290          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 1
Query:  115 SKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKALNAA 438
            SKDSKQLDAEVHRKYIYGGHVAAYM  LMEDEPEKYQSHF  Y+K  +  DN+EE+YKKVHAAIR DP+ KKS+K+PP  HKRYNLKKLTYEERKA+L+ERL ALNAA
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAA 109          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.962e-39
Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKA 426
            D GL++TTTG R+FGA+KG++DGGL+IPHS KRF G+  +SK  +A+VHR++I+  H+A YM+TL E+EPE +Q  F +Y+K GI AD +EE+YKK H AIRADP++ +  K      KR+N  KLT  ERK R V+++KA
Sbjct:  147 DTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.598e-39
Identity = 75/139 (53.96%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSE-KKPPAGHKRYNLKKLTYEERKARLVER 417
            DVGL +TTTG RVFGA+KG++DGGL++PHS KRF G+  +SK+ +AEVHR +I+G HVA YMR+L +D+ + ++  F +Y+K G+ AD +E +YKK H AIRADP+ KK E KK     KR+N +KLT  ERK R+ ++
Sbjct:  147 DVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.920e-38
Identity = 76/136 (55.88%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-GHKRYNLKKLTYEERKARL 408
            DVGL +TTTG RVFGA+KG++DGGL+IPHS KRF G+S ++K  +A+VHR +I+G HVA YMR+L E++ E ++  F  Y+K GI AD+LE++YKK H AIR DP  K + KK  A   KR+N KKLT E+RK ++
Sbjct:  147 DVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
The following BLAST results are available for this feature:
BLAST of CK938651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RL5_CUCSA2.406e-6581.3860S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ORYSJ8.557e-6376.5560S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ1.118e-6276.5560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI1.118e-6276.5560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ARATH9.461e-6274.4860S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH2.108e-6175.1760S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL5_SOLME1.621e-4579.6360S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_LYSTE2.962e-3953.9060S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_BOMMO6.598e-3953.9660S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_DROME1.920e-3855.8860S ribosomal protein L5 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_B02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938651 ID=CK938651; Name=CK938651; organism=Citrus sinensis; type=EST; length=663bp
GGGGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGC
TCTTAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGA
GATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTGAAGTTCAC
CGTAAATACATCTATGGTGGTCATGTTGCTGCCTACATGAGGACTTTGAT
GGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACGTCAAGA
GAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTACATGCT
GCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCCTCCAGC
AGGGCACAAGAGGTACAACCTGAAGAAACTTACGTATGAGGAAAGGAAAG
CCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGATGATGAA
GACGATGAGTGAATGCGATACTAGGAAGTTTTTGTTTCTTAGTTCAATAG
GTTATTTTCAGAGATTACTAAAATTAAAGAACCTGGCTTGTTTGATAGGT
TGAGAACAGTGTTGTTTCTATGAGCTTTCAAATGCCGATGAGACCTGGTT
GTTTGCTGAAATTCCAGTATTTCAATCTTTTGTAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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