CN187804

Overview
NameCN187804
Unique NameCN187804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_ARATH (NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.106e-52
Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = -2
Query:  456 EIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPPPCRDLDAC 797
            +IE ALL HLGVKR EVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNY+EDVTP++VVEIVE LR+GEK P GTQNPKRIK GPEGGN TLL EPKPP  RDLDAC
Sbjct:  142 DIESALLDHLGVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPKRIKCGPEGGNKTLLGEPKPPQFRDLDAC 255          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_BOVIN (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Bos taurus GN=NDUFV2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.412e-15
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+TPK + EI++ L+ G+   PG ++  R    P GG T+L   PK P
Sbjct:  148 ILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIIDELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_MOUSE (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Mus musculus GN=Ndufv2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I + L + LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+TPK + EI++ L+ G+   PG ++  R    P GG T+L   PK P
Sbjct:  147 ILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIIDELKAGKVPKPGPRS-GRFCCEPAGGLTSLTEPPKGP 240          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_PONPY (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pongo pygmaeus GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+T K + EI++ L+ G+   PG ++  R    P GG T+L   PK P
Sbjct:  148 ILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_PANTR (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pan troglodytes GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+T K + EI++ L+ G+   PG ++  R    P GG T+L   PK P
Sbjct:  148 ILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_HUMAN (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+T K + EI++ L+ G+   PG ++  R    P GG T+L   PK P
Sbjct:  148 ILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_GORGO (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+T K + EI++ L+ G+   PG ++  R    P GG T+L   PK P
Sbjct:  148 ILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_RAT (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Rattus norvegicus GN=Ndufv2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.561e-14
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I + L + LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED+TPK + EI++ LR G+   PG ++  R    P GG T+L   PK P
Sbjct:  147 ILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------DYYEDLTPKDIEEIIDELRAGKVPKPGPRS-GRFCCEPAGGLTSLTEPPKGP 240          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_CAEEL (Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Caenorhabditis elegans GN=F53F4.10 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I + + K LG+   E TKDGLF++ E+EC+G CVNAPMI + D          +Y+ED+TPK V EI++ L+ G K P       R+ + P G  T+L   P  P
Sbjct:  137 ITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPMIQIND----------DYFEDLTPKDVNEILDDLKAGRK-PAAGPRSGRLAAEPFGELTSLKETPPGP 230          
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_DICDI (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Dictyostelium discoideum GN=ndufv2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.944e-13
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = -2
Query:  468 EIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPPPCRD 797
            EI      HLG++  E T D  F++ E+EC+G CVNAPM+ + D          ++YED+T    + +++ ++  +    G Q  ++   GP+ G TTLL  P  P CRD
Sbjct:  147 EIIKTCKSHLGIQVGETTPDNKFTLVEVECLGACVNAPMMCIND----------DFYEDLTSASTINLLDQIKNNKPTKIGPQTHRKAAEGPQ-GKTTLLEPPVGPTCRD 245          
The following BLAST results are available for this feature:
BLAST of CN187804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NDUV2_ARATH1.106e-5285.96NADH-ubiquinone oxidoreductase 24 kDa subunit, mit... [more]
NDUV2_BOVIN1.412e-1542.86NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_MOUSE9.151e-1541.90NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_PONPY1.195e-1441.90NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_PANTR1.195e-1441.90NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_HUMAN1.195e-1441.90NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_GORGO1.195e-1441.90NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_RAT1.561e-1441.90NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_CAEEL7.746e-1440.95Probable NADH dehydrogenase [ubiquinone] flavoprot... [more]
NDUV2_DICDI2.944e-1334.55NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187804 ID=CN187804; Name=CN187804; organism=Citrus sinensis; type=EST; length=798bp
GGGCGCTTTTGACAAAGTGAGTTTTTGATAAGTTTTCTGAAACCAAACCA
CCTGTACATTCTCTATTCCCCCACCTAAGCTTCCAGTACTTTTGTCTGGA
GTTTCATCAAAGAGCACCAAAATAAAGCTCCCCAGAAGATAAAAAACACT
TCCAGTCACCAACTCCCATCCATCATTTTCATCATATTACACATTTTTAT
GCATCACCATAAATTCAAGATGAGCATTTAAGTTTTTTTTTTTTTTTTTT
AAGAAAAAGGAAAATAAAACTCGAGTAGTCATCTCACTTGAAATAAGATG
GGGAGTTTATATAACTGAACATCCACCAGAAGCCAAAACTGGCAGGTACA
AAAAATTGTTGAGTTGAACCAATTAAAACCAAAAAAAATAAAACCTAGGC
AAGCCTGAAACATCCAAGCTTTGCATTATTGGAGATGACATCTGCCCAAA
CTTTAGCAGGCATCCAGATCCCGGCATGGAGGAGGTTTTGGTTCACTTAG
CAAAGTTGTATTCCCTCCTTCCGGCCCAGACTTAATGCGCTTTGGATTTT
GCGTGCCGGGCGGTAGCTTCTCCCCCCTCCTTAACATTTCAACTATCTCA
ACAACTCGTTTCGGAGTGACATCTTCATAATAATTGTAAGTATATCCTTC
AGATCCATTGGAGTAATCAGCCACTGTAATCATAGGAGCGTTTACACAGC
ATCCCATGCATTCCATTTCTCCAACAGAGAACAAGCCATCCTTAGTTACT
TCATTGCGCTTCACGCCCAAGTGTTTCAGTAAGGCATCTTCAATTTCT
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