CK938641

Overview
NameCK938641
Unique NameCK938641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5955 contig Csv1_Contig5955:222..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938641 vs. ExPASy Swiss-Prot
Match: VATG_CITLI (V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.337e-33
Identity = 78/110 (70.91%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   83 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 412
            M SNRG GGI           HIVAAARNAKMARL                QVEREFQRKLAES GDSGANVKRLEQETEVKIHHL AGAEKIQYDVVQM LKHVTTVKN
Sbjct:    1 MTSNRGQGGIQQLLAAEQEAQHIVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRKLAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110          
BLAST of CK938641 vs. ExPASy Swiss-Prot
Match: VAGT1_ARATH (V-type proton ATPase subunit G1 OS=Arabidopsis thaliana GN=VHA-G1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.649e-23
Identity = 61/110 (55.45%), Postives = 67/110 (60.91%), Query Frame = 2
Query:   83 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 412
            M SNRG G I           HIV AAR AKMARL                Q E++FQRKL E+SGDSGANVKRLEQET+ KI  L   A +I  DVV+MLLKHVTTVKN
Sbjct:    1 MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110          
BLAST of CK938641 vs. ExPASy Swiss-Prot
Match: VATG1_TOBAC (V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 58/110 (52.73%), Postives = 66/110 (60.00%), Query Frame = 2
Query:   83 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 412
            MAS+ G  GI           HIV  AR AK ARL                 +E EFQRKL ++SGDSGANVKRLEQET+ KI HL   AE++  DVVQMLL+HVTTVKN
Sbjct:    1 MASSSGQNGIQLLLAAEQEAQHIVNNARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRKLEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVKN 110          
BLAST of CK938641 vs. ExPASy Swiss-Prot
Match: VATG2_TOBAC (V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.197e-19
Identity = 56/111 (50.45%), Postives = 63/111 (56.76%), Query Frame = 2
Query:   83 MASNRG-HGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 412
            M SNRG   GI           HIV AAR  K AR+                 +E EFQR + ++SGDSGANVKRLEQET  KI HL   AE I +DVVQMLL+ VTTVKN
Sbjct:    1 MESNRGSQNGIQLLLGAEQEAQHIVNAARTGKQARMKQAKEEAEKEIAEFRAYMEAEFQRNVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVKN 111          
BLAST of CK938641 vs. ExPASy Swiss-Prot
Match: VATG2_ARATH (V-type proton ATPase subunit G2 OS=Arabidopsis thaliana GN=VHA-G2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 48/88 (54.55%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  149 IVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 412
            IV AAR AKM RL                  E+ FQRKL  +SGDSGANVKRLEQET+ KI  L   A +I  DVV MLLK+VTTV N
Sbjct:   19 IVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDSGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106          
The following BLAST results are available for this feature:
BLAST of CK938641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VATG_CITLI1.337e-3370.91V-type proton ATPase subunit G OS=Citrus limon GN=... [more]
VAGT1_ARATH3.649e-2355.45V-type proton ATPase subunit G1 OS=Arabidopsis tha... [more]
VATG1_TOBAC6.883e-2252.73V-type proton ATPase subunit G 1 OS=Nicotiana taba... [more]
VATG2_TOBAC3.197e-1950.45V-type proton ATPase subunit G 2 OS=Nicotiana taba... [more]
VATG2_ARATH1.642e-1554.55V-type proton ATPase subunit G2 OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004440_B11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938641 ID=CK938641; Name=CK938641; organism=Citrus sinensis; type=EST; length=640bp
GGGAGATTGGCGAAGAAAAGGTCTCTGTTGTTCCCCCGCTTTTCACTGAA
TCTTGGCCGCAAGCAAGTCTCAACAGGAAAGCATGGCATCTAATAGGGGT
CATGGTGGAATTCAGCAATTGCTGGCTGCTGAACAAGAAGCTCAACACAT
TGTTGCTGCTGCCAGAAATGCAAAAATGGCTAGACTGAGGCAAGCCAAAG
AAGAGGCTGAAAGGGAGATTGCTGAACATCGAGCTCAGGTGGAGCGTGAG
TTCCAGAGGAAACTTGCAGAGAGTAGTGGAGATTCAGGTGCGAATGTGAA
GAGGCTTGAACAAGAAACAGAGGTAAAAATTCATCATCTTAATGCTGGGG
CTGAGAAAATTCAATATGATGTTGTCCAAATGCTCCTGAAGCATGTTACA
ACTGTGAAGAATTAAGCTCTGATGTTATCTTTTCCTGGTTCGTTGTGAAT
CCTAGACTTCATGTGAGTTGTAATTAGGATCCATGCATTGGTTGTTTCAT
CGTTTGGTTTATTTTGGATTGTAATTTATCAAAGTTGGAAATGAGTTCGT
TGTACTTCAAATTCTGCTCATTGTTAGAATAAATAACCATAAACGTATCA
AAATTATCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top