CK938617

Overview
NameCK938617
Unique NameCK938617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:9..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938617 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.383e-28
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 3 
Query:  132 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQTNSSAVPVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 572
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CK938617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.383e-2843.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004440_D03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938617 ID=CK938617; Name=CK938617; organism=Citrus sinensis; type=EST; length=919bp
GGGGATCCCAAGTCCGAGCTTTGAACTTTCCAGTTAAAGCCAAAGAGTTC
CGAACGGATCAAAGTTTTCTTGTAGGAGAGAGAAATTTCTAGGGCGAGAA
AGCGAGAGAAAAGGAAATTTGGTAGCTTAAAATGTTGGGAGTGTTCAGCA
GCGCGATCGTTTCACCTCCAGAGGAGCTGGTGGCGGCCGGAAGCCGGACT
CCGTCGCCGAAGACCACATCGACGGCACTGGTCGACCGTTTCCTCCAGAC
CAACTCGTCTGCTGTGCCCGTACAGGTCGGGGACAACGTCACCCTCGCGT
ACACTCATCAGAACGAGTCTCCTTTACGGCAAAGATCATTTGCTGTGAAA
GATGAGATCTTTTGCTTGTTTGAGGGAGCACTTGATAACTTGGGAAGCCT
GAGGCAGCAATATGGACTAGCTAAGTCGGCAAATGAAGTGATCTTGGTGA
TTGAGGCATACAAGGCTCTGCGTGATCGGGCCCCTTACCCACCGAACCAT
GTCGTTGGCCACCTTAGTGGGTACTTTGCCTTCATTGTCTACGACAAGTC
CACCTCCACCTTGTTTGTGGCTTCTGACCAATTTGGTAAGGTTCCTCTTT
ATTGGGGAATCACTGCTGATGGACATGTTGCCTTTGCTGATGATGCTGAC
TTGCTCAAAGGTGCTTGCGGCAAGTCACTTGCTTCTTTCCCTCAAGGTTG
TTTCTTCTCAACAGCAGTTGGAGGACTGAGAAGCTTTGAGAATCCAAAGA
ACAAGATCACTGCGGTTCCTGCTGCGGAAGAAGAGATCTGGGGTGCTACA
TTTAAGGTAATGTCATCTTGACATTATCGCAATCTGATTAAAGGTTTCTC
ATTGATTGGTCTCGGTAACCATCAACTGTCTATTTCCACCAGCTATAAAG
CAGCTCTTTTTTGGGAATT
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