CK938616

Overview
NameCK938616
Unique NameCK938616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13689 contig Csv1_Contig13689:665..1321. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 85/218 (38.99%), Postives = 133/218 (61.01%), Query Frame = 3
Query:    3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSWWGKVHTALLSIKTET 656
            VS+ YH    + +EFYK AL+YL+Y  +E                    G+N+Y FG+ +A+PI+ +L G++  WL   L+AFN GD+ +++ L   H   +  Q A+  N +KL +KI+IL L+E+ F  PS+ R+I  S IA+ TKL + ++EHL MKSLS++LI+G IDQ    +H++WV PR+L + QI S+ +R+  W  K  T+L  ++ +T
Sbjct:  163 VSTDYHMAKSQASEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNNRIAEWTEKAKTSLRLVEDDT 380          
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.038e-36
Identity = 84/215 (39.07%), Postives = 123/215 (57.21%), Query Frame = 3
Query:    3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSWWGKVHTALLSIK 647
            +SS Y++     A +YK AL +L    ++                    G+ ++NFGE L HP++ SL  T   WL   L AFNSGD+ R+Q L     +A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++  VE L MK+LSV L+ G ID+V+  VH++WVQPRVL + QI+ ++DRL+ W   V +  L ++
Sbjct:  158 LSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELWCTDVKSMELLVE 368          
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.356e-36
Identity = 82/203 (40.39%), Postives = 118/203 (58.13%), Query Frame = 3
Query:    3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611
            +SS Y++     A +YK AL +L    ++                    GD ++NFGE L HP++ SL  T   WL   L AFNSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA   K+++ +VE L MK+LSV L++G ID+V+  VH++WVQPRVL + QI+ ++DRL+ W
Sbjct:  158 LSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGDGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356          
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.313e-36
Identity = 81/203 (39.90%), Postives = 119/203 (58.62%), Query Frame = 3
Query:    3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611
            +SS Y++     A +YK AL +L    ++                    G+ ++NFGE L HP++ SL  T   WL   L AFNSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++ +VE L MK+LSV L++G ID+V+  VH++WVQPRVL + QI+ ++DRL+ W
Sbjct:  158 LSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356          
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 82/203 (40.39%), Postives = 119/203 (58.62%), Query Frame = 3
Query:    3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611
            +SS Y++     A +YK AL +L    V+                    G+ +YNFGE L HP++ SL  T   WL   L AFNSG++  +Q L     +A   QP L  NE  LL+KI +LCLME+ F+RP+  R +    IA+  K+++ +VE L MK+LSV L++G ID+V+  VH++WVQPRVL + QI+ ++DRL+ W
Sbjct:  158 LSSKYYQTIGNHASYYKDALRFLGCIDVKDLPVSEQQERAFTLGLAGLLGEGVYNFGELLMHPVLESLRSTDRQWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356          
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.958e-35
Identity = 81/203 (39.90%), Postives = 116/203 (57.14%), Query Frame = 3
Query:    3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611
            +SS Y++     A +YK AL +L    ++                    G+ ++NFGE L HP++ SL  T   WL   L AFNSG + R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++  VE L MK+LSV L+ G ID+V+  VH++WVQPRVL + QI+ ++DRL+ W
Sbjct:  158 LSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELW 356          
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27
Identity = 71/203 (34.98%), Postives = 107/203 (52.71%), Query Frame = 3
Query:    3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611
            VS+ Y+K   ++A++Y+  LLYL+   ++                    GD IYNFGE L HP+   L GT+  WL+ ++ A N GDL  ++ L       +   P L  +   L +KI ++ L+E++F  P   RT+    IA  T++   +VE L M++LSV LI G+ID+V   V +S VQ R+L   QI S+  RL  W
Sbjct:  164 VSADYYKAKADYAQYYRHCLLYLSCIDLDKCSHTELVERAVDLSVAAILGD-IYNFGELLLHPVFELLVGTQHEWLHDLVIAMNVGDLPLFERLM----GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNHSQIASMESRLREW 361          
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 69/204 (33.82%), Postives = 108/204 (52.94%), Query Frame = 3
Query:    6 SSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXX-GDNIYNFGEQLAHPIINSLTG-TKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611
            +S Y KF  +F  FY  +LLYL+                          GD IYNFGE L HPI+ ++   +   WL+ +L A   GD  ++  L +V  + +   P L ++E  L +KI ++ L+E +F +    R +    I++ T L  ++VEHL M+++S+ L++G IDQV   V +SWVQPR++   QI  ++DRL  W
Sbjct:  175 NSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVFVK--NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEW 373          
The following BLAST results are available for this feature:
BLAST of CK938616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSD13_DICDI8.207e-4238.9926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT1.038e-3639.0726S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_BOVIN1.356e-3640.3926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN2.313e-3639.9026S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK5.153e-3640.3926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE1.958e-3539.9026S proteasome non-ATPase regulatory subunit 13 OS... [more]
RPN9_SCHPO9.740e-2734.98Probable 26S proteasome regulatory subunit rpn9 OS... [more]
RPN9_YEAST6.980e-2533.8226S proteasome regulatory subunit RPN9 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004440_F04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938616 ID=CK938616; Name=CK938616; organism=Citrus sinensis; type=EST; length=657bp
GGGTGTCATCTCCGTACCATAAATTTCACCAGGAATTTGCAGAGTTCTAC
AAATGTGCTCTTCTTTATCTGGCATACACATCTGTGGAGTCTCTCTCAGA
TTCATTCAAGCTGGATTTGGCATTTGATCTCTCCCTTTCTGCACTGCTGG
GAGATAACATCTACAACTTTGGGGAACAGCTCGCACACCCTATTATAAAT
AGTCTTACAGGAACAAAGGTCTAGTGGCTTTACTATATTCTCCAGGCATT
CAACTCTGGTGACTTAATTCGCTATCAAGAATTATGCCGTGTACACAATG
CTGCTCTGAGAGCTCAACCAGCACTAGTTGAGAACGAAAAGAAGCTATTG
GAAAAGATTAACATTCTCTGCCTGATGGAAATCATCTTTAGCCGGCCTTC
TGAGGACCGAACTATTCCATTAAGCATCATTGCAGAGCGCACAAAACTTT
CTATTGAGGATGTTGAGCATCTTCGCATGAAGTCTCTCTCTGTTCACCTC
ATAGAGGGTATAATTGATCAAGTTGAGGGCACAGTACATGTGTCCTGGGT
GCAACCAAGAGTTTTGGGAATCCCCCAGATCAGATCCTTGCGTGATCGGC
TGGACAGTTGGTGGGGCAAAGTACATACTGCTTTGTTATCCATCAAAACT
GAAACAC
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