CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938603_ssr5 microsatellite CK938603_ssr5:5..18. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938603_ssr19 microsatellite CK938603_ssr19:19..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2258 contig Csv1_Contig2258:2..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.344e-80
Identity = 150/228 (65.79%), Postives = 169/228 (74.12%), Query Frame = 2
Query:   50 GVSSSPTLVGKISCSRRLSYSSNKLTLRTTSH----LAAFHPQSHLFVKFPPGPQRKTVARNSDETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            G+SS    +  +  S   +     L  R  +H    LAAFH QSHLF    P        + S +  IFLPHLVASMEQVEETYIM+KPDGVQRGLVG++ISRFE             CPK+L+EEHYKDL +K F+ KLI+YITSGPVVCMAWEG GVVAS+RKLIG+TDPLQAEPGTIRGDLAVQTGRNVVHGSDSP+NGKREIGLWFKEGE+CQWTPAQA WLRE
Sbjct:    6 GLSSPCNCISSLPHSSSTTTRHQNLLFRRNNHHQQKLAAFHSQSHLFSTKCPLISHSLPRKKSFKPHIFLPHLVASMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFKEGEICQWTPAQAPWLRE 233          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.719e-78
Identity = 147/204 (72.06%), Postives = 163/204 (79.90%), Query Frame = 2
Query:  110 SSNKLTLRTTSHLAAFHPQSHLFVKFPPGPQRKTVARNSDETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            S  ++  RT   LAAF PQ  LF +     +R+  A +S E+GIFLPHLVASME VEETYIMVKPDG+QRGLVG++ISRFE            QCPK+L+EEHYKDL++K FFP LIEYITSGPVVCMAWEG GVVASARKLIG TDPLQAEPGTIRGDLAVQTGRN+VHGSDSPENGKREIGLWFKEGELC+W  A A WLRE
Sbjct:   31 SPARVNFRTA--LAAFRPQFRLFSR-NSASRRRLRASSSAESGIFLPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 8.531e-78
Identity = 146/221 (66.06%), Postives = 164/221 (74.21%), Query Frame = 2
Query:   59 SSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHPQSHLFVKFPPGPQRKTVARNSDETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            SSPT   ++SC+       N +  +   HLAAF P  HLF        R   ++ +  T IFLPHLVASME+VEETYIM+KPDGVQRGLVG++ISRFE             CPK+L+EEHYKDL SKPFFPKLI+YITSGPVVCMAWEG GVVASARKLIG+T+PL AEPGTIRGDLAVQTGRNVVHGSDSP+NGKREI LWF EGELC WTP Q  WL E
Sbjct:   19 SSPT--SRLSCAPSCKLILNPI--KKNHHLAAFQPAVHLFAS---NQSRSHASKRNHTTRIFLPHLVASMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.153e-74
Identity = 141/228 (61.84%), Postives = 162/228 (71.05%), Query Frame = 2
Query:   44 ALGVSSSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHPQSHLFVKFPPGPQRKTV--ARNSDETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            A+ V S   L    S     +  +    LRTT +L+AF  +SHLF               R+S E+GIFLP L+ S+EQV++ YIMVKPDGVQRGLVG++ISRFE            QC K+L+EEHYK LN K FFPKLIEYITSGPVV MAWEG GVV SARKLIG+TDPLQAEPGTIRGD AVQTGRN++HGSDSPENG+REI LWFKEGELC+WTP Q  WLRE
Sbjct:    3 AMAVFSGSNLFATSSLLLTTNSKTRYSQLRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGRNIIHGSDSPENGEREIALWFKEGELCEWTPVQEPWLRE 230          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.788e-47
Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++ +KPDGVQRGLVG +I RFE            +  ++L+E+HY +   KPFFP L+ +ITSGPVV M WEG GV+A+ARKLIG+T+PL AEPGT+RGD AV  GRNV+HGSDSPEN +REI LWF+  EL  W PA   W+ E
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGRNVIHGSDSPENAEREINLWFQTQELVPWEPALTSWVYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.593e-46
Identity = 83/149 (55.70%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T+I +KPDGVQRGLVG +I R E            Q  ++L+E HY +   +PFFP L+++ITSGPVV M W+G GV+A+ARKLIG T+PL AEPGTIRGD  +  GRN+VHGSD PE  +REI LWF+E EL  WTPA   W+ E
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLDAEPGTIRGDFGIDIGRNLVHGSDGPETAQREIALWFQESELVNWTPATQSWIYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.469e-45
Identity = 81/149 (54.36%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++ +KPDGVQRGLVG++I RFE            Q  K+L+E+HY     +PFFP L+E+ITSGPVV M WEG GV+ASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD+PE  ++E+ LWF + EL  W P    WL E
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.469e-45
Identity = 81/149 (54.36%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++ +KPDGVQRGLVG++I RFE            Q  K+L+E+HY     +PFFP L+E+ITSGPVV M WEG GV+ASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD+PE  ++E+ LWF + EL  W P    WL E
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.243e-44
Identity = 82/148 (55.41%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I +KPDGVQRGL+G+++ RFE               ++L+E+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLA+  GRNV+HGSD+PE  + EIGLWF+  EL  WTP+   W  E
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAQFEIGLWFQASELSDWTPSDQGWRTE 151          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.243e-44
Identity = 82/149 (55.03%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++ VKPDGVQR LVG++I RFE               KDL+E+HY +   KPFFP L+++ITSGPVV M WEG GVVASARK+IG+T+PL +EPGTIRGD  V  GRN++HGSD+ E  +REI LWF+  EL  W P    W+ E
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGRNIIHGSDAVETAQREIALWFQPAELVSWEPTLTSWIYE 149          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK2_SPIOL5.344e-8065.79Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH1.719e-7872.06Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_TOBAC8.531e-7866.06Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_PEA1.153e-7461.84Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_THEEB7.788e-4757.05Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_SYNJA6.593e-4655.70Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_ANAVT1.469e-4554.36Nucleoside diphosphate kinase OS=Anabaena variabil... [more]
NDK_ANASP1.469e-4554.36Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]
NDK_SYNPW1.243e-4455.41Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_CYAP41.243e-4455.03Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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