CN187774

Overview
NameCN187774
Unique NameCN187774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4146 contig Csv1_Contig4146:34..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187774 vs. ExPASy Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.659e-39
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 2 
Query:  122 GFTNLDENLLFEVLKHADARTLARAACVNKLWHKTAQDERLWELICTRHFANVGCATQQLRSVVLALGGFRRLHSLYLHQLPRLPPGAPPSSSKWNPLPRVMGPKTPAHWGRDEVHLSLSLLSVRYYEMMT 514
            GF+NLDENL++EVLKH DA+TLA ++CV+K+WHKTAQDERLWELICTRH+ N+GC   QLRSVVLALGGFRRLHSLYL  L +             P PR       A +G+DE+ L+LSLLS+RYYE M+
Sbjct:   31 GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSK-------------PNPR-------ARFGKDELKLTLSLLSIRYYEKMS 141
[Close]
BLAST of CN187774 vs. ExPASy Swiss-Prot
Match: GID2_ORYSJ (F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.481e-27
Identity = 61/127 (48.03%), Postives = 85/127 (66.93%), Query Frame = 2 
Query:  131 NLDENLLFEVLKHADARTLARAACVNKLWHKTAQDERLWELICTRHFANVGCATQQLRSVVLALGGFRRLHSLYLHQLPRLPPGAPPSSSKWNPLPRVMGPKTPAHWGRDEVHLSLSLLSVRYYEMM 511
            +L E+L+FEVL+ A+ARTLA AACV++ W + A+DERLWE  C R +AN+G + +QLR+VVL+LGGFRRLH++Y+  L     G P    +  P         P   GRD+V LSLSL S+ +++ M
Sbjct:   75 DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQP---------PVRLGRDQVQLSLSLFSIGFFQNM 192
[Close]
BLAST of CN187774 vs. ExPASy Swiss-Prot
Match: SNE_ARATH (F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 45/130 (34.62%), Postives = 65/130 (50.00%), Query Frame = 2 
Query:  131 NLDENLLFEVLKHADARTLARAACVNKLWHKTAQDERLWELICTRHFANVGCATQQLRSVVLALGGFRRLHSLYLHQ-LPRLPPGAPPSSSKWNPLPRVMGPKTPAHWGRDEVHLSLSLLSVRYYEMMTI 517
            N   ++L E+L+  D  +L  AACV +LW   A+++ +WE +C R  +     +  LRSVV ALGG+R L+ L +   L RLP                        W RD++ LSLSL  V YYE + +
Sbjct:   29 NDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSLSLRSVVSALGGYRCLYFLCIRPVLARLP---------------------KLLWTRDQLQLSLSLYCVHYYERLYV 135
The following BLAST results are available for this feature:
BLAST of CN187774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GID2_ARATH3.659e-3961.83F-box protein GID2 OS=Arabidopsis thaliana GN=GID2... [more]
GID2_ORYSJ5.481e-2748.03F-box protein GID2 OS=Oryza sativa subsp. japonica... [more]
SNE_ARATH7.191e-1134.62F-box protein SNE OS=Arabidopsis thaliana GN=SNE P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187774 ID=CN187774; Name=CN187774; organism=Citrus sinensis; type=EST; length=747bp
GACGATGAAGCGTATGGGTTTTGATTCTCCGGTCACCGCCGAAGACAAGC
AAAAGATGAAGAAAGTCAAACAAGAGGAGGAGAAGGAGAAGGAGAAAGAG
GGAGAGCAATCCAAAGAAACTGGCTTCACAAATCTGGACGAGAACCTTCT
GTTCGAGGTGTTGAAACACGCGGACGCCAGGACTTTGGCGCGGGCGGCCT
GCGTCAACAAGCTCTGGCACAAGACGGCTCAAGACGAGCGCCTCTGGGAG
TTGATCTGCACCCGCCACTTCGCTAACGTTGGGTGTGCTACCCAACAGCT
GAGATCCGTGGTCCTGGCTCTCGGTGGCTTCCGTCGCCTTCACTCCCTCT
ACCTCCACCAGCTTCCCAGGCTGCCACCCGGCGCTCCGCCTTCTTCCTCC
AAGTGGAATCCTCTCCCGCGCGTCATGGGCCCCAAGACCCCGGCCCACTG
GGGGAGAGACGAGGTCCATCTCTCCTTGTCTCTGCTTTCCGTTCGTTACT
ATGAGATGATGACTATTAGGGATCTAACCAAGCAATGATATATTTACTCC
ATCCTCCTTGTCTATCTACCTTCTATCTCTGTTTTTTTTCTCCGTTTTTG
GCTGGTGAGTTTTGGTTTTCTCTTCTTTTCTTTTTTTTATAAAGAAAAAG
AAAAAAAAACGTTTCGTATGTATGTAATCTGGGACTTAAATTTGTGATCT
GTATTCTTATTATGCTAAAACTAGAATTGTGAAAAAAAAAAAAAAAA
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