CN187773

Overview
NameCN187773
Unique NameCN187773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187773_ssr533 microsatellite CN187773_ssr533:533..550. BLAST: Citrus ESTs to Prunus persica proteins V1
CN187773_ssr591 microsatellite CN187773_ssr591:591..602. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN187773 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-19
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = -1
Query:    6 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDGQAAEAEGNCKCGPTCAC 185
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSC 58          
BLAST of CN187773 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.443e-16
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = -1
Query:    6 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDGQAAEAEGNCKCGPTCAC 176
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACAC 58          
BLAST of CN187773 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = -1
Query:    3 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDGQAAEAEGNCKCGPTCACV 185
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM   AAE+ G CKCG +C CV
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCV 58          
BLAST of CN187773 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.084e-14
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = -1
Query:    3 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDGQAAEAEGNCKCGPTCACV 185
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE  GNCKCGP+CACV
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGPSCACV 60          
BLAST of CN187773 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = -1
Query:    3 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDGQAAEAEGNCKCGPTCACV 185
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCV 60          
BLAST of CN187773 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = -1
Query:    6 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDGQAAEAEGNCKCGPTCAC 185
            MSD CGNCDCAD+SQCVKKG+SY    VE + S    V      A E  G CKCG +C+C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVA-----AGEENGGCKCGTSCSC 55          
BLAST of CN187773 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = -1
Query:    6 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDGQAAEAEGNCKCGPTCAC 185
            MSD CGNCDCAD+SQCVKKG+SY    VE + S    V      A E  G CKCG +C+C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVA-----AGEENGGCKCGTSCSC 55          
The following BLAST results are available for this feature:
BLAST of CN187773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA2.472e-1968.33Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC7.443e-1663.16Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.833e-1463.93Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV4.084e-1459.02Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.006e-1257.38Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.314e-1255.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.314e-1255.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187773 ID=CN187773; Name=CN187773; organism=Citrus sinensis; type=EST; length=644bp
TTCACACAAGCGCAGGTGGGGCCGCACTTGCAGTTACCTTCAGCCTCAGC
AGCCTGCCCGTCCATGACAACAACGGTGCTGACAAAGCTCAAGTCAGTCT
CGACGAAGTCAGCAGCATAGCTGCTTCCCTTCTTCACACACTGGCTCCTG
TCAGCGCAGTCGCAGTTGCCGCAGGTGTCCGACATGTTGATTGAGCTTAG
AACTTAGAACTTAAAACTAAAAAAGAGACTTTGATAATGGTTAACGTATC
TGAAAAAAAGATTAATGGTTATGTACAGTACAGAAAGGAAGGATCAGATT
TCTTATGTATACACATTTGATGATGATTGGGAAACTCAAAACACTGATGC
TTGGTGCTTCTACTTCACCAGCAACTGAGTTGAAGGGCTTCTTCAAAACT
CTTTTCCAAAGCAAAAGAAGAAGAATCAAGATCAACAACAGCAGATGATT
CTTTACCCTCAGTTCTTCCTTTGAATATGGCATAGCCTTGTGATACCCAT
TTGGCTGCTGAAACTTTAACCACCAGAGAAGATGCTGCTGCTGCTGCTGC
TATAGCATGTGGCCTCGAACAAGAAGGAAAAGTTGGCGATGAAGAAGAAG
AAGGCTTGTAACTGTTATGGTAACACAATGTTAACATTGCTGCT
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