CN187771

Overview
NameCN187771
Unique NameCN187771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8610 contig Csv1_Contig8610:573..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187771 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.672e-39
Identity = 77/135 (57.04%), Postives = 103/135 (76.30%), Query Frame = -1
Query:  297 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 701
            +++EVLVISSQKG  ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  WPE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct:   45 DEVEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178          
BLAST of CN187771 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.955e-38
Identity = 72/128 (56.25%), Postives = 100/128 (78.12%), Query Frame = -1
Query:  357 YKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 737
            Y+  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV  +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct:   68 YRYKKQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194          
BLAST of CN187771 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.811e-38
Identity = 76/143 (53.15%), Postives = 104/143 (72.73%), Query Frame = -1
Query:  318 CVKQSLDINEE-----DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 731
            C+   L I+ +     + EVLVISSQKG  ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  WPE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct:   25 CIPYRLKISSDGTISDEFEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166          
BLAST of CN187771 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 73/122 (59.84%), Postives = 93/122 (76.23%), Query Frame = -1
Query:  336 DLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 698
            ++EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R    Q
Sbjct:   78 EIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198          
BLAST of CN187771 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27
Identity = 62/145 (42.76%), Postives = 98/145 (67.59%), Query Frame = -1
Query:  294 EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD--------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS 704
            E  L+VL+ISS     ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   KEDS+   S+S
Sbjct:   44 ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKEDSLAISSIS 187          
BLAST of CN187771 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.842e-27
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = -1
Query:  369 YKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 737
            ++ V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct:   28 FRYVNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158          
BLAST of CN187771 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.015e-25
Identity = 57/135 (42.22%), Postives = 89/135 (65.93%), Query Frame = -1
Query:  312 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ-QLHGKEDSV 695
            LEVL++SS     ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   +       +GYMF L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  + +L  +E++V
Sbjct:   48 LEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETV 182          
The following BLAST results are available for this feature:
BLAST of CN187771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD17_ARATH4.672e-3957.04Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUDT4_ARATH3.955e-3856.25Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD18_ARATH8.811e-3853.15Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUD21_ARATH2.400e-3559.84Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD13_ARATH1.410e-2742.76Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD16_ARATH1.842e-2745.45Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH5.015e-2542.22Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187771 ID=CN187771; Name=CN187771; organism=Citrus sinensis; type=EST; length=737bp
CTTTTTTTTTTTTCGCAATCAGAACCTCATCATTCTTTATTTCTAGAACC
ACCTTTTGTTCTAAACATTGTCAACAAGCCTGTGCTAACCTTTCCTATTT
TCCCACACAGAAGTTTCTGAATTAGAATACCAAGCAAATGAAACAACAAT
TAAAAATGCAGACTTCCGTTATCTGTATCCTTCAGTGTTGTCACTGTTTC
TTGTTCGCTTGGATCTGTACTTCTTGTGGTCTTAGAGCAACTTCCCTCTG
GTCTTCGAAAATTTTCTATGTACAAGTGGGATTTTCTATTCTAGCTCAAA
GAACAGGTTCCTACAGAATCTTCCTTGCCATGTAGTTGTTGAGAAGTTAG
ACGCATTACTAGTCTATCCAATGCTTCCTTCATCCACCAATGCTGACAAA
CTTTTCTAGCTTCTGCCACGCTCATCCATTTTCTGCTTCGCACATTCTTC
TCTGGCCACTCCGCTAATTGATCCTGAACAAGTAATGGGAACATGTATCC
TTGATAGTCAGTGTTGTGTGCTCTGCTCTTGAAATTCCATTCACCCAATA
ATTCACACTCAACGATGCCAGTTACCCCGGCTTCCTCGATGGTTTCTCGT
AAAGCTGCTTCTTGTATGGATTCATCAATTTCCCAGCCTCCCTTTGGGAA
CAACATCCCTTTGCCTTTCTGTGAACTGATGACGAGAACTTCAAGATCCT
CCTCATTAATATCCAAGCTTTGTTTTACGCATTTATA
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