CK938569

Overview
NameCK938569
Unique NameCK938569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938569_ssr518 microsatellite CK938569_ssr518:518..532. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_YEAST (Replication factor A protein 1 OS=Saccharomyces cerevisiae GN=RFA1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 52/151 (34.44%), Postives = 85/151 (56.29%), Query Frame = 2
Query:    5 TFIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454
            +F+K  +F Y AC     +  CNKKV  Q    W+C++C+      ++RY+L   I D+T   W+T F +  +++LG  A  L  LK E  D   F +I +S   N+Y FR++ +E+ + D+ R++ TV     +NY +E+ YL D +SK+
Sbjct:  474 SFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKA 618          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_DANRE (Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 2
Query:    8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISK 451
            +I+  +  Y ACP     + CNKKV  Q    ++C++C++E  +  YR +L A I D     WVT FQ++ E +LG  +  L  LK    ++  F E+ +   FN ++FR ++K E + DE R+K+TV+ A  V++   S+ L+  I K
Sbjct:  455 YIRKENCLYQACP----SKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKD--TNEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRK 597          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_SCHPO (Replication factor A protein 1 OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 46/149 (30.87%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    8 FIKSYSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454
            +I+  +  Y ACP       CNKKV   G  W+C++CN+E D   YRY++   + D TG  W+  F + G+ I+   A EL  L  +  D+  F   +    +  Y+F+ + K++    E RV+ TV+  +Q+++  ES+ L++ I  +
Sbjct:  466 YIRKKNVSYPACPAA----DCNKKVFDQGGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDL--QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFIESA 608          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_MOUSE (Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 50/150 (33.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:    8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454
            F++  +  Y ACP     + CNKKV  Q    ++C++C++E     YR +L A I D     WVT FQES E ILG     +Y+ + + +++  F E+ ++  F  + FR+++K E + DE R+K TV+    V++    R L+  I K+
Sbjct:  479 FLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLIANIRKN 622          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_XENLA (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISK 451
            +++  +  Y ACP     + CNKKV  Q    ++C++CN+E     YR +L A I D     W+T FQES E ILG  A  L  LK   +++  + E+ ++  F  Y FR ++K E + DE R+K T +    V++   SR L+  I K
Sbjct:  461 YLRKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMNIRK 603          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_CHICK (Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 2
Query:   32 YTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454
            Y ACP     + CNKKV  Q    ++C++C++E     YR +L   I D     WVT FQES E ILG  A  L  LK   +++  F E+ ++  FN Y F++++K E + DE R+K T +    VNY   S+ L+  I ++
Sbjct:  475 YQACP----SQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKD--KNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIRRN 610          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_XENTR (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 2
Query:    8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISK 451
            +++  +  Y ACP     + CNKKV  Q    ++C++C++E     YR +L A I D     W+T FQES E ILG  A  L  LK   +++  + E+ ++  F  Y FR+++K E + DE R+K T +    V++   SR L+  I K
Sbjct:  461 YLRKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRK 603          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_PONAB (Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454
            +++  +  Y ACP     + CNKKV  Q    ++C++C+ E     YR +L   I D     WVT FQES E ILG  A  L  LK   +++  F E+ ++  F  ++FR+++K E + DE R+K TV+    V+Y    R L+  I +S
Sbjct:  470 YLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_HUMAN (Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454
            +++  +  Y ACP     + CNKKV  Q    ++C++C+ E     YR +L   I D     WVT FQES E ILG  A  L  LK   +++  F E+ ++  F  ++FR+++K E + DE R+K TV+    V+Y    R L+  I +S
Sbjct:  470 YLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613          
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_DROME (Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 2
Query:   11 IKSYSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLL 436
            +K  +  Y ACP       CNKKV   GN +++C++CN       YR L+   I D T   WV++F E GE++LG  ++E   +   L++D    E I S + F  ++F+L+ K E++GD  R K+TV     +N+   +++LL
Sbjct:  454 VKQENAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQE---VGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLL 590          
The following BLAST results are available for this feature:
BLAST of CK938569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RFA1_YEAST1.593e-2034.44Replication factor A protein 1 OS=Saccharomyces ce... [more]
RFA1_DANRE3.322e-1834.23Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_SCHPO7.400e-1830.87Replication factor A protein 1 OS=Schizosaccharomy... [more]
RFA1_MOUSE7.400e-1833.33Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_XENLA9.665e-1834.90Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_CHICK9.665e-1836.62Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_XENTR2.812e-1734.23Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_PONAB2.812e-1734.67Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_HUMAN2.812e-1734.67Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_DROME1.543e-1534.03Replication protein A 70 kDa DNA-binding subunit O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_B09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938569 ID=CK938569; Name=CK938569; organism=Citrus sinensis; type=EST; length=720bp
GGGAACTTTTATTAAATCATATAGTTTCTGCTACACAGCTTGCCCTTTGA
TGATAGGGGATAGACAGTGCAATAAGAAAGTAACACAGTCTGGAAACAGA
TGGCAATGCGACAGGTGCAATCAAGAAATTGACGAATGTGATTATAGATA
TCTTCTTCAAGCCCAGATTCAAGACCAGACAGGATTGACTTGGGTAACGG
CTTTCCAGGAGTCTGGTGAAGAGATCTTGGGCTGCCCAGCAAAGGAGTTG
TACATGTTGAAATATGAATTGCAGGATGATGTTAGATTTGGGGAGATAAT
TCGGAGTAGAGTCTTTAACCAATATCTTTTCAGGCTTAAGATCAAAGAGG
AATTGCATGGTGATGAGCAGAGGGTGAAGATCACAGTTATTAGGGCAGAC
CAGGTTAACTATTCTTCTGAAAGCAGATACTTGCTTGATTTGATTTCAAA
GTCCTTTAGGAAATGAGTGATTTTAAGCCCAGGCAAGTGATAAAGATTTA
GTAGCTTTATTTCTGCAGAGTTGAGTTGAGTTGACTTGATCGAATTGGTA
AATGAAAATTATACTAGTAGCTTCACGAATTTCGGTCAGGTTATCAATGC
TTGTAGGTATCATTTAATCCTCAATCTGGCTCCCCGTTGTATGCATAATG
CATTCCCTTATTTGAATTTCAATTTTTTATCTTTATTCTACAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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