CK938559

Overview
NameCK938559
Unique NameCK938559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938559_ssr166 microsatellite CK938559_ssr166:166..177. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_FRAAA (Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.126e-36
Identity = 81/169 (47.93%), Postives = 114/169 (67.46%), Query Frame = 2
Query:  365 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            G + W D++ R      +L  L+A+  V GVTSNP IFQKAI+SS+ YN+Q R+L   G D+  A   +   D+++AC +   +YD + G DG VS+EV PRLA + + TV  A+ L  +V+RPN++IKIPAT   +P+I E ++QGISVNVTLIF L RY+ VIDA++
Sbjct:   12 GVAVWLDDISRDRLRTGNLADLVANRSVVGVTSNPTIFQKAIASSDLYNEQLRDLKVRGVDVGEAVRAITAADVREACDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTVAEARALWWLVDRPNLFIKIPATQDGLPAITETLAQGISVNVTLIFGLDRYDAVIDAFM 180          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL1_STRAW (Transaldolase 1 OS=Streptomyces avermitilis GN=tal1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.364e-35
Identity = 87/170 (51.18%), Postives = 109/170 (64.12%), Query Frame = 2
Query:  362 EGQSPWYDNLCRP-VT--DLLPLIA-SGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            EG S W D+L R  +T  +L  LIA   V GVT+NP+IFQ AI S   Y +Q  +L   G  ++ A   +   D++ A  +   +YD T G DG VS+EV PRLA DT+ T+  AK L  +V+RPNV IKIPAT   +P+I EVI  GISVNVTLIFSL RY EV+DAYL
Sbjct:   17 EGVSIWLDDLSRKRITSGNLAELIAHKHVVGVTTNPSIFQAAIGSGEGYEEQLADLAVRGVTVDEAVRMMTTADVRAAADILRPVYDATGGRDGRVSIEVDPRLAHDTEATIAEAKQLAWLVDRPNVMIKIPATKAGLPAITEVIGLGISVNVTLIFSLERYREVMDAYL 186          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_MYCTU (Transaldolase OS=Mycobacterium tuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.088e-35
Identity = 80/169 (47.34%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  365 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS+ RY EV+DAYL
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFSVQRYREVMDAYL 183          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_MYCTA (Transaldolase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tal PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.088e-35
Identity = 80/169 (47.34%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  365 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS+ RY EV+DAYL
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFSVQRYREVMDAYL 183          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_MYCBT (Transaldolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tal PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.088e-35
Identity = 80/169 (47.34%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  365 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS+ RY EV+DAYL
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFSVQRYREVMDAYL 183          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_MYCBP (Transaldolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tal PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.088e-35
Identity = 80/169 (47.34%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  365 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS+ RY EV+DAYL
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFSVQRYREVMDAYL 183          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_MYCBO (Transaldolase OS=Mycobacterium bovis GN=tal PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.088e-35
Identity = 80/169 (47.34%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  365 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS+ RY EV+DAYL
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFSVQRYREVMDAYL 183          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_THIDA (Transaldolase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tal PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.984e-35
Identity = 80/169 (47.34%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  365 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            GQS W DNL R +     L  +IA  GV GVTSNP+IFQ A+++S  Y D    L +   D+E  Y  LVI DI+DAC L   +++ + G DGYVS+EV+PRLA DT GTV+ A+ L  +V+RPN+ +K+P T   V + + +   GI+VNVTL+FS+A+ + V DAY+
Sbjct:   11 GQSLWLDNLSRDLLRDGALAKMIAEDGVSGVTSNPSIFQNALATSPHYADDLARLRREEADVERRYEALVIPDIRDACDLLLPLFERSAGNDGYVSLEVAPRLAYDTSGTVDEARRLWSLVDRPNLLVKVPGTPEGVDAFETLTQLGINVNVTLLFSIAQAQAVFDAYV 179          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_ACIC1 (Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tal PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.173e-34
Identity = 81/168 (48.21%), Postives = 109/168 (64.88%), Query Frame = 2
Query:  365 GQSPWYDNLCRP---VTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAY 856
            G S W D++ R      +L  LI    V GVT+NP IF KAI  S  Y DQ R+L   G D+  A   L   D++ AC +   ++D TDG DG VS+EV PRLA DT+ T+  A+ L  +V+RPN++IKIPAT   +P+I + +++GISVNVTLIFS+ RYE+VIDA+
Sbjct:   12 GVSIWIDDISRDRLQTGNLAALIRDRHVVGVTTNPTIFGKAIEGSARYQDQLRDLAVRGVDVNEALRALTAYDVRWACDVTRPVFDATDGVDGRVSIEVDPRLAHDTEATIAEARALWWLVDRPNLFIKIPATVEGLPAIAQCLAEGISVNVTLIFSVKRYEQVIDAF 179          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_RENSM (Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tal PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.532e-34
Identity = 84/169 (49.70%), Postives = 105/169 (62.13%), Query Frame = 2
Query:  365 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYL 859
            G S W D+L R       L  LI    V GVT+NP+IFQ AIS   +Y  Q  EL   G D+EAA +++  +D+ +AC  F  I   + G DG VS+EV PR A DTQGT+E AK LH  V + NV+IKIPAT   + +I E +  GISVNVTLIFSL RY  VI+A+L
Sbjct:   12 GVSIWLDDLSRERLTSGSLQKLIDEKNVVGVTTNPSIFQAAISKGTSYEQQVSELAAQGADVEAAVFQITTQDVANACDFFAGIAVASKGVDGRVSIEVDPRKAWDTQGTIEEAKRLHAAVGKDNVHIKIPATLEGLEAITETLGAGISVNVTLIFSLGRYRAVINAFL 180          
The following BLAST results are available for this feature:
BLAST of CK938559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_FRAAA8.126e-3647.93Transaldolase OS=Frankia alni (strain ACN14a) GN=t... [more]
TAL1_STRAW2.364e-3551.18Transaldolase 1 OS=Streptomyces avermitilis GN=tal... [more]
TAL_MYCTU3.088e-3547.34Transaldolase OS=Mycobacterium tuberculosis GN=tal... [more]
TAL_MYCTA3.088e-3547.34Transaldolase OS=Mycobacterium tuberculosis (strai... [more]
TAL_MYCBT3.088e-3547.34Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBP3.088e-3547.34Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBO3.088e-3547.34Transaldolase OS=Mycobacterium bovis GN=tal PE=3 S... [more]
TAL_THIDA8.984e-3547.34Transaldolase OS=Thiobacillus denitrificans (strai... [more]
TAL_ACIC11.173e-3448.21Transaldolase OS=Acidothermus cellulolyticus (stra... [more]
TAL_RENSM1.532e-3449.70Transaldolase OS=Renibacterium salmoninarum (strai... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_C08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938559 ID=CK938559; Name=CK938559; organism=Citrus sinensis; type=EST; length=860bp
GGGGGGTGGCATTGCGGTTTCTTCGTTTGTATCGTATTTGGTTGAAGCTT
ACAAATCGTCTCTCTTTATTTCTGAGTTTTTAGATTCAAGGATCAACGAG
TCTTTAATGGCGACCATTTTGAAGCTTACAAATCCAGCTGTTTCTTCATC
ATCTTTGAAACCCAAATCATCATCATCCTCACTGCCTAAATCTTTGATCA
GCCTTCAAACCAAAACTGGGTTCAATTCAAAAGTTGCATCTTCTCAGTTG
ACCCTCAGAAATAACCACCCTTTGAAGGCCTCTTTGGTTGTGAAATGTTC
CCAATCTGGTGGAAATGGAAGTAGTGCAAAGAGGACAACTCTTCATGATC
TCTATGAGCAGGAAGGGCAGAGCCCTTGGTATGATAACCTTTGCCGCCCC
GTCACAGATTTGCTTCCGCTCATTGCAAGTGGTGTTAGAGGTGTTACCAG
CAACCCTGCGATTTTCCAGAAAGCAATATCTTCATCGAATGCTTACAATG
ATCAATTTAGGGAACTTGTACAATCTGGAAAAGATATTGAAGCTGCATAT
TGGGAACTTGTGATTAAGGACATTCAAGATGCATGCAAACTTTTTGAGTC
AATCTATGATGAAACCGATGGCGGTGATGGCTATGTTTCTGTCGAAGTTT
CTCCCAGACTCGCTGATGATACCCAAGGGACCGTGGAGGCAGCAAAATGG
CTTCACAAAGTGGTTAATCGCCCCAATGTATACATAAAGATACCTGCCAC
AGCTCCTTGCGTTCCTTCTATCAAGGAAGTTATTTCGCAGGGCATTAGTG
TCAATGTGACTCTCATATTCTCCCTGGCTAGATATGAAGAAGTCATTGAT
GCTTACTTGG
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