CK938558

Overview
NameCK938558
Unique NameCK938558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8095 contig Csv1_Contig8095:231..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938558 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.623e-46
Identity = 100/162 (61.73%), Postives = 117/162 (72.22%), Query Frame = 1
Query:    4 AISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRARQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPYISDDLELECKGKDKYKCGSNVFWKW 477
            AI+GS GS ELN K+  V++    G K    MPVI+A++V V  +  G++GRR                        GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVP+IS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct:   14 AIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA--GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of CK938558 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.067e-39
Identity = 71/84 (84.52%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  226 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPYISDDLELECKGKDKYKCGSNVFWKW 477
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVP+ISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of CK938558 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.056e-39
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  226 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPYISDDLELECKGKDKYKCGSNVFWKW 477
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVP+I+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of CK938558 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.814e-21
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  223 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPYISDDLELECKGKDKYKCGS 459
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V YI++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of CK938558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH2.623e-4661.73Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE1.067e-3984.52Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU4.056e-3984.52Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA3.814e-2159.49Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004441_C07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938558 ID=CK938558; Name=CK938558; organism=Citrus sinensis; type=EST; length=591bp
GGGGCCATTTCAGGCAGTGCTGGATCATCTGAGCTCAATGCAAAGATTGT
TTCAGTTTCAACCCCGGCTGTGCATGGCCACAAAATGCCTGTGATCAGAG
CTCGACAAGTTGATGTTTCAAAAGAATCAAGAGGAACTGATGGAAGGAGA
GCTGCCATGGCTCTTCTAGCAGTTACCCTTTTCACCACAGCTACTGCTGC
TGCTTCTTCTTCTGCTAATGCTGGGGTCATCGATGAATACCTTGAGAGAA
GCAAAGCCAACAAGGAATTGAATGACCAGAAGAGATTGGCAACAAGTGGT
GCAAACTTTGCCAGAGCATACACTGTTCAATTTGGCACATGCAAGTTCCC
TGAGAACTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTGCCAT
ACATCTCGGATGATTTGGAATTGGAGTGCAAAGGGAAAGATAAATACAAG
TGTGGTTCCAATGTTTTCTGGAAATGGTGAAGTGGGAAAACTGATCTCTT
TAAACATTTTATTTTACCCTCCCATGTATCTAAGTTTCCATTGAAGAACC
TTTACTTGTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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