CN187761

Overview
NameCN187761
Unique NameCN187761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig525 contig Csv1_Contig525:24..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187761 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.247e-88
Identity = 152/197 (77.16%), Postives = 171/197 (86.80%), Query Frame = 2
Query:  110 PANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMT 700
            P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+IPNSMT
Sbjct:  372 PKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMT 568          
BLAST of CN187761 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.935e-88
Identity = 160/225 (71.11%), Postives = 179/225 (79.56%), Query Frame = 2
Query:   26 NSNRSPLKANPIQSHLSFAFKDHSPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMT 700
            NS  + L   P Q+H+          G P   S      LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIPNSMT
Sbjct:  354 NSLAATLSEKPSQTHM--VVPSQRSNGTPQKPS------LKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMT 570          
BLAST of CN187761 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.540e-88
Identity = 150/194 (77.32%), Postives = 170/194 (87.63%), Query Frame = 2
Query:  119 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMT 700
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIPNSMT
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMT 565          
BLAST of CN187761 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 73/192 (38.02%), Postives = 108/192 (56.25%), Query Frame = 2
Query:  143 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT---GRPNVDWCE--SHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMT 700
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T   G   +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+ +  NPR+FITKI  Y ++ +IPNSMT
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMT 190          
The following BLAST results are available for this feature:
BLAST of CN187761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM2_ARATH2.247e-8877.16Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM1_ARATH2.935e-8871.11Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH8.540e-8877.32Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
YL780_MIMIV2.364e-2938.02Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187761 ID=CN187761; Name=CN187761; organism=Citrus sinensis; type=EST; length=701bp
CCCATAGATTCAATCAATAGTACGAAATTCTAACAGATCCCCCTTAAAGG
CCAATCCGATCCAGTCTCATCTCTCCTTTGCCTTCAAAGACCATTCCCCA
ATGGGTTTCCCAGCCAACGGCTCCGACGCCGGCTCCAAGCCGCTCAAGTT
TCTCATCTACGGCCGCACTGGCTGGATTGGGGGCTTGCTCGGCAAGCTCT
GCCAAGCTCAGTCCATTGACTTCACCTACGGCTCCGGCCGCCTCGAGAAC
CGCGCCTCCCTCGAAGCCGACATCGCCGCCGTCAAGCCCACCCACGTCTT
CAACGCGGCCGGGGTGACCGGCAGGCCCAACGTCGACTGGTGCGAATCGC
ATAAGGTCGAGACCATACGGACTAATGTCGTCGGCACCCTTACGCTTGCT
GACGTCTGCAGAGACAAAGGTTTGATTCTCATTAATTACGCCACCGGCTG
CATCTTCGAGTACGATTCCGGTCACCCCCTCGGATCCGGCATCGGCTTCA
AGGAGGAGGATACTCCGAATTTTGTCGGATCTTTCTACTCCAAGACTAAG
GCCATGGTGGAAGAGTTGCTCAAGAATTTTGAGAATGTCTGTACTTTGCG
TGTCAGGATGCCGATCTCATCAGATTTATCCAATCCTCGCAACTTCATCA
CAAAGATCACTCGATATGAAAAGGTAGTCAACATTCCAAACTCAATGACT
A
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