CK938550

Overview
NameCK938550
Unique NameCK938550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2116 contig Csv1_Contig2116:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938550 vs. ExPASy Swiss-Prot
Match: NOS1_ARATH (Nitric oxide synthase 1 OS=Arabidopsis thaliana GN=NOS1 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.357e-54
Identity = 116/201 (57.71%), Postives = 132/201 (65.67%), Query Frame = 2 
Query:  137 HHFTNSTPKFLKTYTNPTL-IVCKSTLS---PETQFESDGAGAAAPTRGDRFLELQKAKEAAXXXXXXXXXXXXXXXXXXXX----NTAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVXXXXXXXXXKQFVSADELREKLSHLRRERALIVKLVDIVDFNGSFLAHIRDLAGAN 715
            H  T   P     Y NPT  IVCKS  +   P +  E DG  AAAPT G+RFLE Q+A EA                         +T+V+ CYGCGAPLQTS+ D+PG+VD  TYELKKKHHQ +T++CGRC+LLSHGHMITAV         KQFVSADELREKLSHLR E+ALIVKLVDIVDFNGSFLA +RDL GAN
Sbjct:   16 HTTTRREPNLTVIYRNPTTSIVCKSIANSEPPVSLSERDGFAAAAPTPGERFLENQRAHEAQKVVKKEIKKEKKKKKEEIIARKVVDTSVSCCYGCGAPLQTSDVDSPGFVDLVTYELKKKHHQLRTMICGRCQLLSHGHMITAVGGNGGYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLVGAN 216
[Close]
BLAST of CK938550 vs. ExPASy Swiss-Prot
Match: NOS_ORYSJ (Putative nitric oxide synthase OS=Oryza sativa subsp. japonica GN=Os02g0104700 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.340e-48
Identity = 99/163 (60.74%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  239 DGAGAAAPTRGDRFLELQKAKEAAXXXXXXXXXXXXXXXXXXXXNTA----VASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVXXXXXXXXXKQFVSADELREKLSHLRRERALIVKLVDIVDFNGSFLAHIRDLAGAN 715
            +GAG AAP+RGDRFL  Q A EAA                      A     A+CYGCGAPLQT++  APGYV P TY+LKK+HHQ +TVLCGRC+LLSHGHMITAV         KQFVSAD+LR+KLS+LR E+ALI+KLVDIVDFNGSFLA +RD AGAN
Sbjct:   46 EGAGPAAPSRGDRFLGTQLAAEAAARVLAPEDAERRRRRREKRKALARKPSAAACYGCGAPLQTADEAAPGYVHPATYDLKKRHHQLRTVLCGRCKLLSHGHMITAVGGHGGYPGGKQFVSADQLRDKLSYLRHEKALIIKLVDIVDFNGSFLARVRDFAGAN 208
The following BLAST results are available for this feature:
BLAST of CK938550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOS1_ARATH6.357e-5457.71Nitric oxide synthase 1 OS=Arabidopsis thaliana GN... [more]
NOS_ORYSJ2.340e-4860.74Putative nitric oxide synthase OS=Oryza sativa sub... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004441_D09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938550 ID=CK938550; Name=CK938550; organism=Citrus sinensis; type=EST; length=715bp
GGGGGCGCGCTNNNTNNNCGTCTCTTCCCAAAACCAAACCCACTGTCACA
GCTGAAGCTCACTCATACAACGCAACGGTTGCTAATTTATGGCGCTTAAA
ACTCTCACAACATTTCTCTCCCCGCTCTCTCTCCCTCACCACTTCACAAA
CTCTACCCCTAAATTCCTCAAAACTTACACTAATCCCACTCTCATAGTTT
GCAAATCAACGCTCTCACCCGAGACCCAATTCGAATCCGACGGAGCCGGA
GCCGCAGCCCCGACCCGCGGGGACCGGTTCCTTGAGCTCCAAAAAGCTAA
GGAGGCTGCCAAGGTAGTCTTAAGAGACAGTAAGAAGAAAAGGAAGAAGA
AAGATAAGGTTTTGAAGGTTAACACGGCCGTTGCTTCTTGTTACGGCTGT
GGAGCTCCGTTGCAGACCTCGGAGTCGGATGCTCCGGGTTATGTTGACCC
GGATACGTATGAATTGAAGAAGAAACACCACCAGTTTAAAACTGTGCTTT
GTGGGAGGTGTCGGCTTTTATCCCATGGACACATGATAACTGCGGTTGGT
GGAAATGGAGGTTACGCCGGTGGGAAGCAGTTTGTTTCAGCCGATGAGCT
CAGGGAGAAGCTGTCTCACTTACGTCGTGAGAGAGCTTTAATTGTTAAAT
TGGTTGATATTGTGGACTTCAATGGCAGCTTTTTGGCTCATATACGTGAC
CTTGCTGGTGCAAAT
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