CK938549

Overview
NameCK938549
Unique NameCK938549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:111..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.744e-23
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTCG 294
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S  +  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.206e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  106 TCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 297
            TCGNCDC D+SQCVKKG+SY  D VET+ S+   V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.882e-18
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTC 291
            MSD CGNCDCAD SQCVKKG+S   D VETD S+   VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.697e-16
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTC 291
            MS  C NCDC+D SQC KKG S+    VET+     TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.601e-16
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTCG 294
            MS  C NCDCAD +QCVKKG+SY    VET+     TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.339e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTCG 294
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.339e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTCG 294
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTCG 294
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK938549 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFASTVVVMDVQAAETEGNCKCGPTCACVNCTCG 294
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK938549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.744e-2369.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.206e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.882e-1867.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV2.697e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO4.601e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.339e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.339e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.253e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI4.761e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004441_D07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938549 ID=CK938549; Name=CK938549; organism=Citrus sinensis; type=EST; length=581bp
CGCCGGGGATANNNTCACAGCAAAGCAAAGNNNGTTTCGTACAATAAAGA
GCCCTCTATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGT
CGGACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAG
AAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGC
CAGCACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACT
GCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCAC
TAATAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAA
ATATTGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAA
TTCTCTACTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGT
GCGTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATA
ATCATGTAATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAAT
TCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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