CK938541

Overview
NameCK938541
Unique NameCK938541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2118 contig Csv1_Contig2118:5..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938541 vs. ExPASy Swiss-Prot
Match: GL8D1_XENLA (Glycosyltransferase 8 domain-containing protein 1 OS=Xenopus laevis GN=glt8d1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  217 NGEPVHIAMTLDPEYLRGTIAAVHSVLKHTSCPENVFFHFIATESSSANTN---DLAQTVRSAFPYLSFQVYVFREKFVTGLISSSIRRALDSPLNYARIYLADILEPSIKRVIYLDSDVIVVDDIQKLWRIPLSGGRTIGAPEYCHANSTKY 666
            +GE + + +    E L G IA ++S+  +T    NV F+ I T  +  + +   D     R A+  L+F   V   K      +  ++     P+ +AR YL  +L P  K+VIYLD DVIV DDI +L+  P+S G      E C + ++K+
Sbjct:   61 HGEEIAVVIPGVEERLGGLIATINSISSNTK--SNVVFYIITTNDTKKHISSWLDGTDLKRVAYKLLTFDARVLDGKVRVDAGAEPVK-----PMTFARFYLPSLL-PGAKKVIYLDDDVIVQDDIVQLYNTPISPGHAAAFSEDCDSVTSKF 205          
BLAST of CK938541 vs. ExPASy Swiss-Prot
Match: GL8D1_MOUSE (Glycosyltransferase 8 domain-containing protein 1 OS=Mus musculus GN=Glt8d1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 53/189 (28.04%), Postives = 82/189 (43.39%), Query Frame = 1
Query:  223 EPVHIAMTLDPEYLRGTIAAVHSVLKHTSCPENVFFHFIATESSSANTNDLAQTVRSAFPYLSFQVYVFREKFVTGLISSSIRRALD-SPLNYARIYLADILEPSIKRVIYLDSDVIVVDDIQKLWRIPLSGGRTIGAPEYCHANSTK-----------YFSDEFWSDREFSRVFEGKRPCYFNTGVMV 753
            E + + +    + L GTIAA++SV  H +   NV F+ +   S++ +      +   +   + +++  F  K + G +     +     PL +AR YL  IL PS K+ IY+D DVIV  DI  L+  PL  G      E C + STK           Y     +      ++      C FN GV V
Sbjct:   64 EEIPVVIAASEDRLGGTIAAINSV--HQNTRSNVMFYIVTFNSTADHLRSWLNS--GSLKSIRYKIVNFDTKLLEGKVKQDPDQGESMKPLTFARFYLP-ILVPSAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSASTKVIIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFV 247          
BLAST of CK938541 vs. ExPASy Swiss-Prot
Match: GL8D1_XENTR (Glycosyltransferase 8 domain-containing protein 1 OS=Xenopus tropicalis GN=glt8d1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 43/157 (27.39%), Postives = 75/157 (47.77%), Query Frame = 1
Query:  196 ECPNLAANGEPVHIAMTLDPEYLRGTIAAVHSVLKHTSCPENVFFHFIATESSSANTNDLAQTVRSAFPYLSFQVYVFREKFVTGLISSSIRRALDSPLNYARIYLADILEPSIKRVIYLDSDVIVVDDIQKLWRIPLSGGRTIGAPEYCHANSTKY 666
            E P     GE + + +    E L G +AA++S+  +T    NV F+ I T  +  +         +    +++++  F  + + G +          P+ +AR YL ++L P  K+ IYLD DVIV DDI+ L+  PL  G      + C + ++K+
Sbjct:   56 ESPPEERQGEEIAVVIPGVEERLGGLVAAINSISSNTK--SNVVFYIITTNDTKGHIRSWLDG--TGLKRVTYKLLAFDTRVLDGKVRVDAGAEPVKPMTFARFYLPNLL-PETKKAIYLDDDVIVQDDIRDLYNTPLRPGHAAAFSDDCDSVTSKF 207          
The following BLAST results are available for this feature:
BLAST of CK938541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GL8D1_XENLA1.503e-1131.37Glycosyltransferase 8 domain-containing protein 1 ... [more]
GL8D1_MOUSE2.564e-1128.04Glycosyltransferase 8 domain-containing protein 1 ... [more]
GL8D1_XENTR5.712e-1127.39Glycosyltransferase 8 domain-containing protein 1 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004441_E12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938541 ID=CK938541; Name=CK938541; organism=Citrus sinensis; type=EST; length=759bp
GGGAAATGACACAGCAGCGACATCGATCTTTGCTGCGCATTCGATAATAA
TGTTTCGTCCGAGAGAGGTCTTCCCATTAATCTTGTTCGTAAGTTCCCTC
GTGTTCTTGTCCGTGGATGCTGTTAGATCATTTCCGAGGATTAAATTCGA
TGCTTCCGTGCAATTTCTGGAGGCGCCGGTGTATCAAACGGCCTGGAGTG
TCCGAATTTGGCCGCAAATGGCGAGCCTGTTCACATTGCCATGACACTTG
ATCCTGAGTACTTGAGGGGCACCATTGCTGCAGTTCACTCGGTTCTCAAA
CACACTTCTTGCCCGGAAAACGTTTTCTTTCACTTCATCGCCACGGAGTC
AAGTTCGGCGAACACAAATGACCTGGCACAGACTGTCCGGTCTGCCTTCC
CTTATTTGAGCTTCCAAGTTTATGTGTTCCGAGAAAAATTCGTCACCGGT
TTGATCTCGTCTTCTATCCGCCGTGCTCTTGACAGCCCCTTGAATTATGC
GAGAATTTACTTAGCTGACATACTTGAGCCTTCTATCAAACGCGTAATCT
ACCTCGACTCGGATGTCATTGTTGTCGATGATATACAGAAACTCTGGAGG
ATTCCCCTATCCGGGGGAAGAACAATCGGAGCTCCAGAGTACTGTCATGC
GAATTCCACCAAGTATTTCTCCGATGAGTTCTGGTCCGACCGCGAGTTTT
CCAGGGTTTTCGAAGGGAAGAGACCTTGCTACTTCAATACAGGAGTGATG
GTCATGGGA
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