CN187755

Overview
NameCN187755
Unique NameCN187755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187755_ssr90 microsatellite CN187755_ssr90:90..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12263 contig Csv1_Contig12263:81..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187755 vs. ExPASy Swiss-Prot
Match: NSP5_ARATH (Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.698e-69
Identity = 118/203 (58.13%), Postives = 151/203 (74.38%), Query Frame = -1
Query:  189 DAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 797
            + G P RSYHS A DDR VY+FGG    GR+N L  +DVVD+KW++YP+AGE CKGRG PGL+V +G+IWV++GF G E+ D+HCFD A  QW  VET+G+ P ARSVF  V  GK+IV+YGGE +P +L H+GAGK +GE+Y LDTETLVW R   G   +  P  RGWCAF   ++ G+ GLLV+GGNSP+N+RLDD+ F+
Sbjct:  117 EEGLPGRSYHSMAGDDRKVYVFGGVTAKGRVNTLHAYDVVDQKWVEYPAAGEACKGRGAPGLVVVEGRIWVLFGFDGNELGDIHCFDLASEQWKAVETTGDVPAARSVFPAVSYGKYIVIYGGEEEPHELMHMGAGKMSGEVYQLDTETLVWERIVCG-NEEEKPSQRGWCAFTKAVKDGEEGLLVHGGNSPTNERLDDLVFW 318          
BLAST of CN187755 vs. ExPASy Swiss-Prot
Match: NSP4_ARATH (Nitrile-specifier protein 4 OS=Arabidopsis thaliana GN=NSP4 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.741e-58
Identity = 99/203 (48.77%), Postives = 136/203 (67.00%), Query Frame = -1
Query:  189 DAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 797
            + GP  RS+HS AAD+ +VY+FGG   + RLN L  +++VD+KW    + G++   RGG GL V QGK+WVVYGF G EVDDVH +DP   +W QVET G +P+ RSVF++  +GKHIV++GGE+    L H+G G+     ++LDTETL W R D   G +  P  RGW A      GGK GL+++GG +P+NDR DD++F+
Sbjct:  412 EEGPTPRSFHSMAADEENVYVFGGVSATARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAALGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGGEEETPSSRGWTASTTATIGGKKGLVMHGGKAPTNDRFDDLFFY 614          
BLAST of CN187755 vs. ExPASy Swiss-Prot
Match: NSP1_ARATH (Nitrile-specifier protein 1 OS=Arabidopsis thaliana GN=NSP1 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.321e-57
Identity = 99/203 (48.77%), Postives = 135/203 (66.50%), Query Frame = -1
Query:  189 DAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 797
            + GP  RS+HS AAD+ +VY+FGG   + RLN L  +++VD+KW    + G++   RGG GL V QGK+WVVYGF G EVDDVH +DP   +W QVET G +P+ RSVF++  IGKHIV++GGE+    L H+G G+     ++LDTETL W R D   G +  P  RGW A       GK GL+++GG +P+NDR DD++F+
Sbjct:  263 EEGPTPRSFHSMAADEENVYVFGGVSATARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAIGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGGEEETPSSRGWTASTTATIDGKKGLVMHGGKAPTNDRFDDLFFY 465          
BLAST of CN187755 vs. ExPASy Swiss-Prot
Match: NSP2_ARATH (Nitrile-specifier protein 2 OS=Arabidopsis thaliana GN=NSP2 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.262e-56
Identity = 100/203 (49.26%), Postives = 135/203 (66.50%), Query Frame = -1
Query:  189 DAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 797
            + GP  RS+HS  AD+ +VY+FGG   + RL  L  +++VD KW+Q  + G +C  RGG GL V QGK+WVVYGF G EVDDVHC+DPA  +W QVET GEKP ARSVF++  +GKHI+V+GGE+      H G G+ +G  ++LDTETL W + D     +  P  RGW A   G   GK GL+++GG + +NDR  D++F+
Sbjct:  264 EQGPTPRSFHSMTADENNVYVFGGVSATVRLKTLDAYNIVDHKWVQCSTPGGSCSVRGGAGLEVVQGKVWVVYGFNGCEVDDVHCYDPAQDKWTQVETFGEKPCARSVFASAVVGKHILVFGGEIAMDPKAHEGPGQLSGGTFALDTETLKWEKLDKLGEEEETPSIRGWSASTTGTIDGKKGLVMFGGKAQTNDRFGDLFFY 466          
BLAST of CN187755 vs. ExPASy Swiss-Prot
Match: NSP3_ARATH (Nitrile-specifier protein 3 OS=Arabidopsis thaliana GN=NSP3 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.543e-54
Identity = 98/203 (48.28%), Postives = 133/203 (65.52%), Query Frame = -1
Query:  189 DAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 797
            + GP  RS+HS AAD+ +VY+FGG G   R+  L  +++VD+ W    + G++   RGG GL V QGK+W+VYGF G EVDDVH +DPA  +W QVET G KP  RSVF++  IGKHIV++GGE+      H+G G+     ++LDTETL W R D   G+   P  RGW A   G   GK GL+++GG +P+NDR DD++F+
Sbjct:  263 EEGPTPRSFHSMAADEENVYVFGGVGAMDRIKTLDSYNIVDKTWFHCSNPGDSFSIRGGAGLEVVQGKVWIVYGFNGCEVDDVHFYDPAEDKWTQVETFGVKPNERSVFASAAIGKHIVIFGGEIAMDPRAHVGPGQLIDGTFALDTETLQWERLDKFEGT---PSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 462          
BLAST of CN187755 vs. ExPASy Swiss-Prot
Match: ESP_ARATH (Epithiospecifier protein OS=Arabidopsis thaliana GN=ESP PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 5.679e-49
Identity = 97/217 (44.70%), Postives = 133/217 (61.29%), Query Frame = -1
Query:  189 GPPHRSYHSTAADDRHVYIFGGCGVSGRLND------LWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFA---------GVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPG-PRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 791
            GP  R++HS A+D+ HVY+FGG    G +N       +  +++ D KW Q P  G+N + RGG G  V QGKIWVVYGFA           E + V  +DPA  +W +VET+G KP+ARSVF+   +GK+I+++ GEV P   GH G G  + E Y+LDTETLVW +     G +  P  PRGW A+      GK+GLL++GG  P+N+R DD+YF+
Sbjct:  124 GPEARTFHSMASDENHVYVFGGVSKGGTMNTPTRFRTIEAYNIADGKWAQLPDPGDNFEKRGGAGFAVVQGKIWVVYGFATSIVPGGKDDYESNAVQFYDPASKKWTEVETTGAKPSARSVFAHAVVGKYIIIFAGEVWPDLNGHYGPGTLSNEGYALDTETLVWEKL----GEEGAPAIPRGWTAYTAATVDGKNGLLMHGGKLPTNERTDDLYFY 336          
The following BLAST results are available for this feature:
BLAST of CN187755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NSP5_ARATH1.698e-6958.13Nitrile-specifier protein 5 OS=Arabidopsis thalian... [more]
NSP4_ARATH8.741e-5848.77Nitrile-specifier protein 4 OS=Arabidopsis thalian... [more]
NSP1_ARATH3.321e-5748.77Nitrile-specifier protein 1 OS=Arabidopsis thalian... [more]
NSP2_ARATH1.262e-5649.26Nitrile-specifier protein 2 OS=Arabidopsis thalian... [more]
NSP3_ARATH1.543e-5448.28Nitrile-specifier protein 3 OS=Arabidopsis thalian... [more]
ESP_ARATH5.679e-4944.70Epithiospecifier protein OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187755 ID=CN187755; Name=CN187755; organism=Citrus sinensis; type=EST; length=797bp
CCCTTTTTGATGCATGTACATTATAACTTCTCAGTTCTTATCTGCCTTAA
TATCTATTTATTCACCGCTCAAGGACTTGCTCTACACAAACACACACACT
CCACGATTTCTCTCATACGCATATTGCCATAATTACATCACCATCATTAT
CAAAATGATTAATCTTCAATCCCATCCAAGCAAGGAGTAAAGAAGTAAAT
GTCATCAAGCCTATCATTACTTGGAGAATTGCCACCGTATACCAGTAGTC
CATGTTTTCCACCCCTAAGCCCACCAGCAAATGCACACCATCCGCGAGGC
CCGGGATGATGATCTGAGCCGGGCCCATCATCCCACCGTGTCCACACCAA
TGTCTCAGTGTCCAATGAGTAAAGTTCACCGGCGAATTTTCCGGCCCCAA
GGTGGCCCAAGTCACTGGGGTCTACTTCTCCGCCGTAGACGACTATGTGT
TTTCCGATCCCAACAGTAGAAAATACGCTCCGAGCTGTTGGTTTTTCGCC
GCTCGTCTCTACCTGGGCCCATTGTGCATGGGCTGGATCAAAGCAATGCA
CATCATCCACTTCCACTCCAGCAAAACCATACACAACCCATATCTTCCCC
TGGGTCACTATCAACCCGGGCCCACCTCTACCCTTGCAGTTCTCCCCTGC
CGATGGATATTGGATCCATTTTCTATCAACAACATCAAAACCCCATAGAT
CATTAAGCCGGCCTGAAACACCACAACCGCCGAAGATGTACACGTGTCGA
TCATCAGCGGCCGTTGAGTGGTAGCTCCTATGAGGGGGGCCAGCATC
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