CK938532

Overview
NameCK938532
Unique NameCK938532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938532_ssr131 microsatellite CK938532_ssr131:131..145. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:6..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938532 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  163 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANEPDGADLRAMFL 444
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CK938532 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  163 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANEPDGADLRAMFLKH 450
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CK938532 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  163 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANEPDGADLRAMFLKH 450
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
The following BLAST results are available for this feature:
BLAST of CK938532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARG2_PHAAU1.097e-1650.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI3.652e-1245.83Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.367e-1140.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004441_E02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938532 ID=CK938532; Name=CK938532; organism=Citrus sinensis; type=EST; length=554bp
GGGGATAAACACAAACGCTTTGAGGGGATTTTCGCGCTACGAAGAGGGAA
GTTTCTTTAGCTGCTGTTGAAGGCTTTTCGATAGAAAGAATAGAAGGAAA
TTGCTTTCTGCAGCAGCGTTAAGATCTCTTATCATCATCATCATCCCACA
TAACTAAGAAAAATGGCTCGCTCTTTCTCAAACGCTAAGCTTTTCTCTGC
TTTCGTCGCTGACGGAATCTCTAACGCCATCTACAAAAGAGGATACTCGG
CGGCATCACAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTAGGAGTGCT
GCTGCGATGTTGAAGAAACCAGCAGAAGAGATGACAGGATCCAGTGAGAA
GGTCTCGTGGGTCCCAGACCCAGTCACTGGTGTCTACAGGCCGGAGAATC
TCGCCAACGAGCCCGATGGGGCCGACCTCAGAGCCATGTTCTTGAAGCAC
AACAACTGATCATCAAAATTAATAAGTATTATTATTAATATATATTAATT
CGGACATGGAAACTGAGGAAGGACGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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