CN187751
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1) HSP 1 Score: 363.614 bits (932), Expect = 6.272e-101 Identity = 180/210 (85.71%), Postives = 185/210 (88.10%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGNS ELYCLEHGI PDGMMPSD T+GVAHDAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 6.272e-101 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1) HSP 1 Score: 360.918 bits (925), Expect = 4.035e-100 Identity = 178/210 (84.76%), Postives = 184/210 (87.62%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI PDG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 4.035e-100 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1) HSP 1 Score: 358.221 bits (918), Expect = 2.596e-99 Identity = 176/210 (83.81%), Postives = 184/210 (87.62%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI PDG MPSD ++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.596e-99 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1) HSP 1 Score: 358.221 bits (918), Expect = 2.596e-99 Identity = 176/210 (83.81%), Postives = 184/210 (87.62%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI PDG MPSD ++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.596e-99 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1) HSP 1 Score: 357.066 bits (915), Expect = 5.765e-99 Identity = 176/210 (83.81%), Postives = 184/210 (87.62%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI+ DG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 5.765e-99 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1) HSP 1 Score: 355.14 bits (910), Expect = 2.179e-98 Identity = 175/210 (83.33%), Postives = 184/210 (87.62%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI DG MPSD+++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 2.179e-98 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1) HSP 1 Score: 352.443 bits (903), Expect = 1.402e-97 Identity = 174/210 (82.86%), Postives = 182/210 (86.67%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI DG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL RVR+L+DNCTGLQGFLVFNAV VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLGRVRQLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 25.409 bits (54), Expect = 1.402e-97 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRLISQI Sbjct: 224 YTNLNRLISQI 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 350.517 bits (898), Expect = 9.015e-97 Identity = 171/210 (81.43%), Postives = 181/210 (86.19%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI PDG MPSD T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 9.015e-97 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRL+SQ+ Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 350.517 bits (898), Expect = 9.015e-97 Identity = 171/210 (81.43%), Postives = 181/210 (86.19%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI PDG MPSD T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 9.015e-97 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRL+SQ+ Sbjct: 224 YTNLNRLVSQV 234
BLAST of CN187751 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 2.611e-96 Identity = 170/210 (80.95%), Postives = 180/210 (85.71%), Query Frame = 2 Query: 2 VGNSPLELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIEEANFT 631 VGN+ ELYCLEHGI PDG MP D T+G DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE +T Sbjct: 16 VGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 HSP 2 Score: 24.6386 bits (52), Expect = 2.611e-96 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 628 YTNLNRLISQI 660 YTNLNRL+SQ+ Sbjct: 224 YTNLNRLVSQV 234 The following BLAST results are available for this feature:
BLAST of CN187751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187751 ID=CN187751; Name=CN187751; organism=Citrus sinensis; type=EST; length=670bpback to top |