CN187749

Overview
NameCN187749
Unique NameCN187749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187749_ssr4 microsatellite CN187749_ssr4:4..15. BLAST: Citrus ESTs to Prunus persica proteins V1
CN187749_ssr210 microsatellite CN187749_ssr210:210..224. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2487 contig Csv1_Contig2487:160..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN187749 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 66/197 (33.50%), Postives = 83/197 (42.13%), Query Frame = 2 
Query:   62 EKKKFTTMALEALNSPTTSTHNHHPFRYEDSWTKRRRSKRPRTDESPQLXXXXXXXTEEEYMALCLIMLARGTTTANTAPAERTPTLAPEQKPLDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALGGHKR 616
            E+ +    A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQALGGHKR
Sbjct:   15 EQHQLDVEAAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKR 180
The following BLAST results are available for this feature:
BLAST of CN187749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT1.119e-1833.50Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187749 ID=CN187749; Name=CN187749; organism=Citrus sinensis; type=EST; length=618bp
ATGCTCTCTCTCTCTCGAAACTCAACAGATTCAACCACAAGAGTCGAGAA
TTCACTAACAAGAAAAGAAAAAATTCACGACTATGGCTCTAGAAGCTCTA
AACTCCCCTACAACAAGCACCCACAATCATCATCCGTTTAGATACGAAGA
CTCATGGACTAAAAGAAGGCGCTCAAAACGACCCCGTACCGACGAGTCCC
CACAACTACCAGCAGCAGCAGCAGCTCCCACGGAAGAAGAGTACATGGCT
CTCTGTCTCATCATGCTCGCCCGCGGTACCACCACCGCCAACACCGCTCC
GGCCGAAAGAACCCCAACCCTGGCGCCGGAACAGAAGCCGCTGGATCAGT
TCCCGGAGCCGCCAAGTTTGAAACTCTCTTACAAGTGCAGTGTGTGCAAC
AAGGCTTTCTCTTCGTACCAGGCCCTTGGTGGGCACAAAGCCAGCCACCG
CAAGAACGCTGCTGACGCCTCGGCTTCTCCCAACGCCGCAGCCGCCAGTG
ACGTCACCCCACCACCGTCGGCAACGGCGAGCAGCGGAAGCGGTGGTAGG
ACCCACGAGTGCTCTATTTGTCACAAGTCTTTTCCCACGGGACAAGCTCT
AGGAGGCCACAAGCGGTG
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