CN187747

Overview
NameCN187747
Unique NameCN187747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_NEUCR (2-nitropropane dioxygenase OS=Neurospora crassa GN=ncd-2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 65/190 (34.21%), Postives = 104/190 (54.74%), Query Frame = 3
Query:  180 RKTRSLTERPF----GVGVVLAFPHNENIKAILSEKVAVL-----QVSW---------------GEYSEELVLEA-HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ-DGLISLLPMVVDLIG----DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 659
            R    LT+RP     G+GV L   H  ++  +    + +L     Q  W                + + + ++EA H++G  V  QVG+  +ARKA   G D I+ QG +AGGH +    G++SL+P V D++     +R++ ++AAGG+ D RG V AL LGA+G+ LGTRF  + E+ + PE++RK++
Sbjct:   83 RSRLGLTDRPLTPLPGIGVGLILTHTISVPYVTDTVLPILIEHSPQAVWLFANDPDFEASSEPGAKGTAKQIIEALHASGFVVFFQVGTVKDARKAAADGADVIVAQGIDAGGHQLATGSGIVSLVPEVRDMLDREFKEREVVVVAAGGVADGRGVVGALGLGAEGVVLGTRFTVAVEA-STPEFRRKVI 271          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAT (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=USA300HOU_0879 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 56/152 (36.84%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  249 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 677
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A    +  ++   +T+
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETD 265          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAE (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0792 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 56/152 (36.84%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  249 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 677
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A    +  ++   +T+
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETD 265          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAC (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain COL) GN=SACOL0922 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 56/152 (36.84%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  249 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 677
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A    +  ++   +T+
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETD 265          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA8 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00855 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 56/152 (36.84%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  249 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 677
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A    +  ++   +T+
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETD 265          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA3 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0825 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 56/152 (36.84%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  249 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 677
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A    +  ++   +T+
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETD 265          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_BACSU (Probable 2-nitropropane dioxygenase OS=Bacillus subtilis GN=yrpB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 76/258 (29.46%), Postives = 119/258 (46.12%), Query Frame = 3
Query:   51 IVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV----LAFPHNENIK------------------------------AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH------VIGQD--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDK--TEYTDVF 692
            I+QAP+   I+ P                A  +  PD L   I++   LT+ PF + V     L  P  + IK                               IL  KV     ++    E+ V E  +AG  ++    + +EA      G+D +++QG EAGGH        G+   GL++L+P   D +    +P+IAAGG++D RG  AAL+LGAQG+ +G+ F+   ES AHP +K+K++E ++  T+ T +F
Sbjct:   14 IIQAPMAGGITKPRLASAVSNQGALGSL-ASGYLTPDLLEQQIKEIFELTDAPFQINVFVPLGLEMPPKDQIKKWKENIPLANQVNQFTSVQEEWDDFYQKIDLILKYKVKACSFTFDLPPEDAVKELKTAGCCLIGTASTVEEALLMEERGMDIVVLQGSEAGGHRGAFLPSKGESAVGLMALIPQAADAL---SVPVIAAGGMIDHRGVKAALTLGAQGVQIGSAFLICHESNAHPVHKQKILEANEADTKLTTLF 267          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAS (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0791 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  249 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 677
            +I  I+ ++V V   ++G  SE ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A    +  ++   +T+
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETD 265          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAR (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0883 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  249 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 677
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A    +  ++   +T+
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETD 265          
BLAST of CN187747 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAN (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain N315) GN=SA0781 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  249 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 677
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A    +  ++   +T+
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETD 265          
The following BLAST results are available for this feature:
BLAST of CN187747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
2NPD_NEUCR3.069e-2134.212-nitropropane dioxygenase OS=Neurospora crassa GN... [more]
2NPD_STAAT2.598e-2036.84Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAE2.598e-2036.84Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAC2.598e-2036.84Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAA82.598e-2036.84Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAA32.598e-2036.84Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_BACSU4.431e-2029.46Probable 2-nitropropane dioxygenase OS=Bacillus su... [more]
2NPD_STAAS7.558e-2036.18Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAR1.684e-1935.53Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAN2.199e-1935.53Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187747 ID=CN187747; Name=CN187747; organism=Citrus sinensis; type=EST; length=700bp
GCCTTTTTACTCTCATGGGTTGGAGAGGAATGCTGGGTTTCCCTTATGGG
ATTGTTCAGGCACCATTGGGACCTGATATTTCAGGCCCGGAGCTTGTAGC
TGCTGTTGCTAATGCCGGTGGTCTTGGTCTTCTTAGAGCCCCCGATTGGG
AAGCACCAGATTACTTGAGGGATCTGATAAGGAAGACAAGATCATTAACA
GAGCGACCATTTGGGGTTGGTGTGGTTCTAGCATTTCCCCACAACGAAAA
TATAAAGGCTATACTTAGTGAAAAAGTAGCAGTTTTGCAAGTTTCCTGGG
GTGAATATTCAGAGGAGCTCGTTCTTGAAGCTCATAGTGCTGGAGTCAAA
GTTGTCCCCCAAGTTGGGAGTTTTGACGAAGCAAGAAAAGCAGTTAACGC
AGGTGTAGATGCAATTATAGTCCAAGGACGTGAAGCTGGGGGCCATGTAA
TTGGACAGGATGGTTTGATTTCCTTATTGCCAATGGTGGTTGATCTTATC
GGGGATCGAGATATTCCAATAATTGCTGCAGGTGGTATTGTGGATGCACG
TGGTTATGTTGCAGCCCTGTCTCTTGGTGCTCAAGGCATCTGCTTAGGCA
CAAGGTTTGTGGCAAGTGAGGAAAGCTATGCGCATCCTGAGTACAAGAGA
AAGTTGGTTGAAATGGACAAAACTGAATATACAGATGTATTTGGCAGGGC
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