CN187741

Overview
NameCN187741
Unique NameCN187741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2618 contig Csv1_Contig2618:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_SORC5 (Pseudouridine-5'-phosphate glycosidase OS=Sorangium cellulosum (strain So ce56) GN=psuG PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.408e-67
Identity = 134/234 (57.26%), Postives = 168/234 (71.79%), Query Frame = 3
Query:   75 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            K+ + IS EV +AL+ G  VVALESTII+HGMPYPQN E  + VEA+VR NGAVPATIAI++G   VG+  E+LERLA+ G KA K +RRD+A ++   G   TTV+ TM  A+  GI VF TGGIGGVHR  E T DIS+DL EL +T VAV+ AG KSILDIP+TLE LETHGV V  YKT +FPAF+   SG KV  R++S E+ AR+I +  +L +G G+++  PIP  H
Sbjct:    4 KDHLSISSEVRKALAGGRPVVALESTIITHGMPYPQNLEMVRRVEAVVRRNGAVPATIAIMDGKLRVGVKGEDLERLARGGGKAAKASRRDVAALLVLGGMAGTTVATTMMAAAWAGIQVFATGGIGGVHRGAETTFDISADLEELSQTQVAVVCAGAKSILDIPKTLETLETHGVPVLGYKTEDFPAFWARQSGQKVDHRIESAEEAARVIALQFELGMG-GVLVANPIPESH 236          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_STAAW (Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) GN=psuG PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.086e-65
Identity = 133/231 (57.58%), Postives = 164/231 (71.00%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            ++ S EV +AL +   +VALESTIISHGMPYPQN E A  VE I+RNNGA+PATIAI++G   +GL +E+LE LA     A K +RRD+A VVA +  GATTV+ TM  A+M GI  FVTGGIGGVH+  EHTMDIS+DL EL +T V VI AG KSILD+P+T+EYLET GV V  Y+TNE PAFFT  SG K+   V++PE  A +     +L L  G+V+  PIP EH
Sbjct:    8 IEYSREVQQALENNQPIVALESTIISHGMPYPQNVEMATTVEQIIRNNGAIPATIAIIDGKIKIGLESEDLEILATSKDVA-KVSRRDLAEVVAMKCVGATTVATTMICAAMAGIQFFVTGGIGGVHKGAEHTMDISADLEELSKTNVTVICAGAKSILDLPKTMEYLETKGVPVIGYQTNELPAFFTRESGVKLTSSVETPERLADIHLTKQQLNLEGGIVVANPIPYEH 237          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_HAHCH (Pseudouridine-5'-phosphate glycosidase OS=Hahella chejuensis (strain KCTC 2396) GN=psuG PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.192e-65
Identity = 130/229 (56.77%), Postives = 161/229 (70.31%), Query Frame = 3
Query:   90 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            ISPEV  AL+ G  VVALESTIISHGMP+PQN ETA +VE IVR+NGAVPATIAI++G   VGLS EE+E L K G    K +RRDI  ++A  G+GATTV++TM  A+M G+ VF TGGIGGVHR  + T DIS+DL EL  T VAVI AG KSILD+  T EYLETHGV +  Y+T+  PAF+T  S   V  ++D+PE  A+ +    ++ L  G+VI  PIP  +
Sbjct:    7 ISPEVQTALAAGEPVVALESTIISHGMPWPQNAETALQVEQIVRDNGAVPATIAIIKGRLKVGLSKEEIEYLGKAGLNVTKASRRDIPFIIARGGDGATTVASTMILAAMAGVKVFATGGIGGVHRGAQETFDISADLQELAHTNVAVICAGAKSILDLGLTREYLETHGVPLVGYQTSTLPAFYTRDSDFDVDYQLDTPEQIAQALQAKWEMGLQGGVVIANPIPEAY 235          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG2_PHOLL (Pseudouridine-5'-phosphate glycosidase 2 OS=Photorhabdus luminescens subsp. laumondii GN=psuG2 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.568e-64
Identity = 128/237 (54.01%), Postives = 163/237 (68.78%), Query Frame = 3
Query:   66 SLAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            +++   + ISPEV+EAL +   VVALESTII+HGMPYPQN +TA +VE  +R NGAVPATIA++ G+   GLS EE+  LA+ G +  K +RRD+  V+A   NGATTV++TM  A+M GI +F TGGIGGVHR  E T DIS+DL EL +T VAV+ AG KSILD+  T EYLETHGV +  Y+T+  PAFF  TS   V  R+DSPE  A+ + V     L  GLV+  PIP  +
Sbjct:    5 AISNKYLDISPEVTEALENNRPVVALESTIIAHGMPYPQNVKTALQVEQKIRENGAVPATIAVINGMMKAGLSHEEIAFLARKGDEITKVSRRDLPFVIAAGKNGATTVASTMIIAAMAGIRIFATGGIGGVHRGAEQTFDISADLQELAKTSVAVVCAGAKSILDLGLTTEYLETHGVPLIGYQTHALPAFFCRTSPFSVNIRLDSPEQIAQAMAVKWDTGLQGGLVVANPIPEPY 241          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_SOLUE (Pseudouridine-5'-phosphate glycosidase OS=Solibacter usitatus (strain Ellin6076) GN=psuG PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.048e-64
Identity = 131/231 (56.71%), Postives = 165/231 (71.43%), Query Frame = 3
Query:   84 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSK-AQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            +KI PEV  AL     VVALESTII+HGMPYP+N  TA+ +E+ VR  GAVPATIA++ G+ CVGLS +ELE LA  G+K   K +R D+ + +AT+  GATTV+ATM  A++ GI +F TGGIGGVHR  E T DIS+DL E  RT VAV+ AG K+ILD+P+TLEYLET GV V AY T+EFPAF++  SG K P R+D+P + AR ++V   L L  G VI  P+P E
Sbjct:    3 LKIDPEVRRALQGKRPVVALESTIITHGMPYPENLATARSLESQVRAGGAVPATIAVIGGVICVGLSDKELEWLA--GAKNVLKLSRNDLPYAIATQKIGATTVAATMIAANLAGIRIFATGGIGGVHRGAETTFDISADLEEFARTSVAVVCAGAKAILDLPKTLEYLETRGVPVIAYGTDEFPAFWSRQSGLKAPLRLDTPAEIARFLEVKWSLNLTGGAVICNPVPAE 231          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_CLOBL (Pseudouridine-5'-phosphate glycosidase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=psuG PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.958e-64
Identity = 130/236 (55.08%), Postives = 164/236 (69.49%), Query Frame = 3
Query:   69 LAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH 776
            + +  ++IS EVSEAL     VVALESTIISHGMPYP+N ETA  VE I+R+ GA+PATIAIL G   VGL+ +E+E L K G +  KT+RRDI  ++A + +GATTV++TM  A++ GI VF TGGIGGVHR  + + DIS+DL EL  T VAV+ AG KSILDI  TLEYLET GV V  + T E PAF+T  SG KV  RVD+ ++ A  +     L L  G+V+G PIP E+
Sbjct:    1 MLEKYLEISKEVSEALKENKPVVALESTIISHGMPYPKNAETALNVEKIIRDKGAIPATIAILNGKLKVGLTKDEIEYLGKKGKEVVKTSRRDIPFILAKKLDGATTVASTMIVANLAGIKVFGTGGIGGVHRGAQESFDISADLQELANTNVAVVCAGAKSILDIGLTLEYLETQGVPVVGFGTEELPAFYTRKSGFKVDYRVDTAKELAEALKAKWDLGLKGGMVVGNPIPEEY 236          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_BREBN (Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=psuG PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.958e-64
Identity = 127/231 (54.98%), Postives = 161/231 (69.70%), Query Frame = 3
Query:   75 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 767
            K  +  + EV  AL +   VVALE+TIISHGMPYPQN E AKEVE I+R+NGAVPATI I++G   +GL+  ELE  A       K +RRD A+++A+   GATTV+ATM  A M GI +F TGGIGGVHR GE T D+S+DLTEL +T VAV+ AG KSILDI RTLEYLET GV V  Y+T+EFP+FF   SG  V  R+D+PE+  ++++    L L  G++I  P+P
Sbjct:    2 KQYLTFTEEVRHALENNLPVVALETTIISHGMPYPQNIEMAKEVEQIIRDNGAVPATIGIMDGKIKIGLTDSELEEFAT-NKNVAKVSRRDFAYILASGKIGATTVAATMIAAEMAGIHMFATGGIGGVHREGEITWDVSADLTELAQTDVAVVCAGAKSILDIGRTLEYLETQGVPVVGYRTDEFPSFFARKSGFGVDMRIDTPEEVGKMMNTKWDLGLKGGMIIANPVP 231          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_RHOCS (Pseudouridine-5'-phosphate glycosidase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=psuG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.733e-63
Identity = 130/232 (56.03%), Postives = 163/232 (70.26%), Query Frame = 3
Query:   78 NLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            + + I PEV+ AL  G  VVALEST+ISHG+P P N ETA+ +EA VR NGAVPATIA+L+G   VGL  E+++RLA  G+   K +RRD+  V+A   +GATTV+ATM  A + GI VF TGGIGGVHR  E T DIS+DL EL  T VAV+ AG K+ILD+PRTLEYLET GV V  + T+ FPAF+   SG  V  R D+PED AR+++   +L L  G+V+ VPIP E
Sbjct:    3 DFLSIHPEVAAALKAGRPVVALESTLISHGLPAPANLETAQAIEAAVRANGAVPATIAVLDGRIRVGLDAEDMQRLAAPGTA--KVSRRDLPLVLAKGADGATTVAATMIAADLAGIAVFATGGIGGVHRGVETTGDISADLEELATTSVAVVCAGAKAILDLPRTLEYLETRGVPVVGFGTDAFPAFYHRDSGLPVDGRCDTPEDAARVLNAKWRLGLAGGIVVAVPIPDE 232          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_LYSSC (Pseudouridine-5'-phosphate glycosidase OS=Lysinibacillus sphaericus (strain C3-41) GN=psuG PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.862e-63
Identity = 129/231 (55.84%), Postives = 162/231 (70.13%), Query Frame = 3
Query:   75 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 767
            K  + +S EV    + G  +VALESTIISHGMPYPQN +TA+EVE I+R+NGAVPATIA+++G   +GLS EELE        A K +RRD+ +++AT+  GATTV+ATM  A + GI +FVTGGIGGVHR  E TMD+S+DL EL +T VAVI AG KSILDI  TLEYLET GV V  Y T+E PAF+T  SG  V  ++D+PE+ A ++    +L L  G VI  PIP
Sbjct:    2 KEFIVLSEEVKAGQAKGLPIVALESTIISHGMPYPQNVQTAREVEQIIRDNGAVPATIALIDGKIKIGLSDEELEMFGNAQGVA-KASRRDLGYLLATKKLGATTVAATMICAELAGIEIFVTGGIGGVHRGAETTMDVSADLEELAQTNVAVICAGAKSILDIGLTLEYLETKGVPVVGYGTDELPAFYTRQSGFDVNFQLDTPEEIAEMLSAKWQLGLKGGAVIANPIP 231          
BLAST of CN187741 vs. ExPASy Swiss-Prot
Match: PSUG_ECOLI (Pseudouridine-5'-phosphate glycosidase OS=Escherichia coli (strain K12) GN=psuG PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.587e-63
Identity = 129/235 (54.89%), Postives = 159/235 (67.66%), Query Frame = 3
Query:   69 LAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 773
            ++  L++ISPEV +AL +   VVALESTIISHGMP+PQN +TA EVE  +R  GAVPATIAI+ G+  VGLS EE+E L + G    K +RRD+  VVA   NGATTV++TM  A++ GI VF TGGIGGVHR  EHT DIS+DL EL  T V V+ AG KSILD+  T EYLET GV +  Y+T   PAFF  TS   V  R+DS  + AR + V  +  L  GLV+  PIP +
Sbjct:    6 ISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQ 240          
The following BLAST results are available for this feature:
BLAST of CN187741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_SORC54.408e-6757.26Pseudouridine-5'-phosphate glycosidase OS=Sorangiu... [more]
PSUG_STAAW1.086e-6557.58Pseudouridine-5'-phosphate glycosidase OS=Staphylo... [more]
PSUG_HAHCH9.192e-6556.77Pseudouridine-5'-phosphate glycosidase OS=Hahella ... [more]
PSUG2_PHOLL1.568e-6454.01Pseudouridine-5'-phosphate glycosidase 2 OS=Photor... [more]
PSUG_SOLUE2.048e-6456.71Pseudouridine-5'-phosphate glycosidase OS=Solibact... [more]
PSUG_CLOBL5.958e-6455.08Pseudouridine-5'-phosphate glycosidase OS=Clostrid... [more]
PSUG_BREBN5.958e-6454.98Pseudouridine-5'-phosphate glycosidase OS=Brevibac... [more]
PSUG_RHOCS1.733e-6356.03Pseudouridine-5'-phosphate glycosidase OS=Rhodospi... [more]
PSUG_LYSSC3.862e-6355.84Pseudouridine-5'-phosphate glycosidase OS=Lysiniba... [more]
PSUG_ECOLI6.587e-6354.89Pseudouridine-5'-phosphate glycosidase OS=Escheric... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004O24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187741 ID=CN187741; Name=CN187741; organism=Citrus sinensis; type=EST; length=778bp
CCCTCTTTTCTTATATCGGCTCTCTAAGATTGTCCAATATTCAAAATCAC
TCAAATCCCATTGATTCACTTGCTAAAAATTTAGTGAAGATCTCTCCAGA
GGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTCTTGAATCCA
CAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAGACAGCCAAG
GAGGTGGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGCAACGATTGC
TATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAGAACTGGAAA
GGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGGAGGGACATT
GCACATGTTGTGGCTACCAGAGGGAATGGAGCAACTACTGTTTCCGCGAC
CATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAACTGGGGGAA
TTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATTTCATCAGAT
CTTACAGAGCTTGGAAGGACTCCAGTGGCCGTCATCTCTGCTGGCATAAA
GTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAACTCATGGAG
TTTGTGTTGCTGCTTATAAGACGAATGAGTTTCCGGCTTTTTTCACTGAA
ACCAGTGGCTCCAAGGTGCCTTGTCGTGTTGATAGCCCAGAAGATTGTGC
TCGGTTAATAGATGTAAACATGAAACTTAAGCTTGGATCTGGACTTGTGA
TTGGTGTCCCAATCCCAAGAGAACATGC
back to top