CN187736

Overview
NameCN187736
Unique NameCN187736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.841e-63
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GFSSD+RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA RRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  302 LDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 424
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.841e-63
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GFSSD+RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA RRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  302 LDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 424
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.247e-62
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV+PDVNFEELARSTDDFNGAQLKAVCVEAGMLA RRDATEV HEDFNEGIIQVQAKKKASLNYYA
Sbjct:  301 LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKASLNYYA 423
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 2.108e-61
Identity = 118/123 (95.93%), Postives = 120/123 (97.56%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEAR RILQIHSRKMNV+ DVNFEELARSTDDFNGAQLKAVCVEAGMLA RRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  301 LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 423
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 8.009e-61
Identity = 116/123 (94.31%), Postives = 121/123 (98.37%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GFSSD+RIKVIAATNRADILDPALMRSGRLDRKIEFPHP+EEARARILQIHSRKMNV+PDVNFEELARSTDDFNGAQLKAVCVEAGMLA RRDATEV HEDFNEGIIQVQAKKK+SLNYYA
Sbjct:  307 LDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA 429
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.855e-50
Identity = 96/123 (78.05%), Postives = 109/123 (88.62%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GF  + ++KVIAATNR DILDPAL+RSGRLDRKIEFP P EEARARI+QIHSRKMNV PDVN+EELAR TDDFNGAQ KAVCVEAGM+A RR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  317 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 2.855e-50
Identity = 96/123 (78.05%), Postives = 109/123 (88.62%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GF  + ++KVIAATNR DILDPAL+RSGRLDRKIEFP P EEARARI+QIHSRKMNV PDVN+EELAR TDDFNGAQ KAVCVEAGM+A RR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  317 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.085e-49
Identity = 96/123 (78.05%), Postives = 108/123 (87.80%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GF  + ++KVIAATNR DILDPAL+RSGRLDRKIEFP P EEARARI+QIHSRKMNV PDVN+EELAR TDDFNGAQ KAVCVEAGM+A RR ATE+ HED  EGI++VQAKKKA+L YYA
Sbjct:  320 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRRGATELTHEDHMEGILEVQAKKKANLQYYA 442
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.417e-49
Identity = 95/123 (77.24%), Postives = 108/123 (87.80%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GF    ++KVIAATNR DILDPAL+RSGRLDRKIEFP P EEARARI+QIHSRKMNV PDVN+EELAR TDDFNGAQ KAVCVEAG++A RR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  282 LDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 404
[Close]
BLAST of CN187736 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.015e-47
Identity = 95/123 (77.24%), Postives = 105/123 (85.37%), Query Frame = -1 
Query:  212 LEGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAFRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 580
            L+GFSSD  IKVIAATNR DILDPAL+RSGRLDRKIEFP P EEARA ILQIHSRKMNV  DVNF+ELARS++DFNGAQLKAVCVEAGM+A RR  TE+ H DF EG ++V AKKK +L YYA
Sbjct:  299 LDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGCVEVMAKKKKTLEYYA 421
The following BLAST results are available for this feature:
BLAST of CN187736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
PS6AA_ARATH3.841e-6397.5626S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM3.841e-6397.5626S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS6A_SOLLC4.247e-6296.7526S protease regulatory subunit 6A homolog OS=Sola... [more]
PS6AB_ARATH2.108e-6195.9326S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6A_ORYSJ8.009e-6194.3126S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_RAT2.855e-5078.0526S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN2.855e-5078.0526S protease regulatory subunit 6A OS=Homo sapiens... [more]
PRS6A_MOUSE1.085e-4978.0526S protease regulatory subunit 6A OS=Mus musculus... [more]
PR6AB_XENLA1.417e-4977.2426S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PRS6A_DICDI1.015e-4777.2426S protease regulatory subunit 6A homolog OS=Dict... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004O21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187736 ID=CN187736; Name=CN187736; organism=Citrus sinensis; type=EST; length=580bp
TTTTTTTTTTTTTTTTTGCACAAATCTTTTCTTGAAAATAGAACTTGGAT
TTTTCAGCTAATGCATTTGTCACAATTATCATGTTTTCTTCTAAATTTCG
AAACTTAGGGCAAAGTTTATATTAAAACAAAGTATTACATCAATGAATTG
AAAAAACACATGATATTAACCTAACTCCCAAGAGGAGCTTCCTCTCGGGT
ATCAATGTCTAGGCATAATAATTCAGGCTAGCCTTCTTCTTAGCCTGGAC
CTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCTGTAGCATCAC
GGCGAAAAGCTAGCATTCCTGCTTCAACACAGACCGCTTTTAGTTGTGCC
CCATTGAAATCATCAGTGGACCGAGCAAGTTCTTCAAAATTGACATCTGG
GTGAACATTCATCTTCCTTGAATGGATCTGCAAAATACGAGCTCTTGCTT
CTTCAGTGGGATGAGGGAACTCAATTTTGCGATCCAATCGACCAGAACGC
ATAAGAGCAGGGTCCAAAATATCAGCACGATTTGTTGCTGCTATCACCTT
AATCCGATCATCACTACTAAATCCCTCAAG
back to top