CN187733

Overview
NameCN187733
Unique NameCN187733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187733_ssr109 microsatellite CN187733_ssr109:109..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 56/88 (63.64%), Postives = 77/88 (87.50%), Query Frame = -1
Query:  306 EAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT 569
            +A   LPEE+V ++EAVV+RGGL A+ AA++ I+ L  ++REG+DT+RESAAATLVT+CRKGGSE+VA++AA+PGIERVIWE++ +GT
Sbjct:  542 DAFQELPEEAVAVVEAVVRRGGLMAVSAAFSLIRLLGEVMREGADTTRESAAATLVTMCRKGGSELVAEMAAIPGIERVIWEMIGAGT 629          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3
Query:  576 NLPTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            N  TSQPNVSGLILAGSADFKTELSQSDMFDPRL AKILNVVDVSYGGENG
Sbjct:  214 NPATSQPNVSGLILAGSADFKTELSQSDMFDPRLAAKILNVVDVSYGGENG 264          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 3
Query:  576 NLPTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            N  TSQPNVSGLILAGSADFKTELSQS++FDPRLQAKILNVVDVSYGGENG
Sbjct:  213 NPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENG 263          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 3
Query:  576 NLPTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            N  TSQPNVSGLILAGSADFKTELSQS++FDPRLQAKILNVVDVSYGGENG
Sbjct:  212 NPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENG 262          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 38/50 (76.00%), Postives = 46/50 (92.00%), Query Frame = 3
Query:  579 LPTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            +   +PN++GLILAGSADFKTELSQSDMFDPRLQ+K++ +VDVSYGGENG
Sbjct:  214 ITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENG 263          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:  579 LPTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            +   +PNV+GL+LAGSADFKTELSQSDMFD RLQ KIL +VDVSYGGENG
Sbjct:  214 ITNDRPNVTGLVLAGSADFKTELSQSDMFDQRLQVKILKLVDVSYGGENG 263          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  597 NVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENG
Sbjct:  220 NVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENG 263          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  597 NVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENG
Sbjct:  220 NVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENG 263          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  597 NVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENG
Sbjct:  220 NVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENG 263          
BLAST of CN187733 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  597 NVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENG 728
            NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENG
Sbjct:  220 NVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENG 263          
The following BLAST results are available for this feature:
BLAST of CN187733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PUB16_ARATH3.394e-2663.64U-box domain-containing protein 16 OS=Arabidopsis ... [more]
ERF1X_ARATH3.076e-1994.12Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Z_ARATH4.018e-1992.16Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH4.018e-1992.16Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_DROME4.158e-1676.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_POLMI2.064e-1578.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR2.980e-1481.82Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA2.980e-1481.82Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT2.980e-1481.82Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT2.980e-1481.82Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187733 ID=CN187733; Name=CN187733; organism=Citrus sinensis; type=EST; length=728bp
AGGAGAGCCGGCCCCTTTTTTTTTTTTTTTTCAAGAACAAACATATCAAC
TTAATTATTTGTAGCCTATTTTACAATTAAACTTGGAGTAAAACATAATT
GTAATTAAAATAATAATAATAATAATAATAATAGTAGTAGTAGACTAGTA
GTAGTAAAATTGAAGTGTTAGCTTGGCAATACTATTCTTGAATTTGCCAT
AGCTGTCGTGGTGACGGTGGTGGTTGAAGAACTACGGGCATCTAACCCAG
CAGCCCATCTTCTAAGAATCCTCAACAGTGCTGCCGCCTTTCTTCTTGCC
CTCGCAGTTCCACTTTCCATTAATTCCCATATTACCCTCTCAATCCCCGG
CACCGCTGCAATATCCGCCACCATCTCCGACCCGCCTTTTCTACATATAG
TCACGAGAGTCGCCGCTGCACTTTCTCTCGACGTGTCGGACCCTTCCCTT
AACAAAATGCACAGTTTCTTTATTGTATTATACGCCGCCACAATCGCCGT
CAGCCCGCCTCTCTTCACCACGGCTTCGAGTATGGTTACCGATTCTTCCG
GTAACACGTCCATCGCCTCAGCTACAATCTCCCTACCAGTCAGCCCAATG
TGTCTGGATTAATTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTGAGC
CAGTCTGATATGTTTGATCCTCGTTTACAAGCCAAGATATTGAATGTTGT
TGATGTTTCTTATGGTGGGGAAAATGGT
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