CN187732

Overview
NameCN187732
Unique NameCN187732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PD4_ARATH (Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic OS=Arabidopsis thaliana GN=At1g09420 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 9.045e-46
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = -1
Query:  153 VNNKVPGLGLQLDASELNLLYKDKYNAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHGVQWTED 458
            +NNKVPGLGLQLDASELNLLYKD+Y  EV DSYEHL+ DVIDGDNHLFMRSDE+ AAWNIL+PVL+EIDK++ APELYE GGRGPV AYYLWAKHGV W +D
Sbjct:  524 INNKVPGLGLQLDASELNLLYKDRYKTEVPDSYEHLIHDVIDGDNHLFMRSDEVAAAWNILSPVLEEIDKHHTAPELYEFGGRGPVAAYYLWAKHGVPWADD 625          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PDC_SOLTU (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.498e-32
Identity = 62/99 (62.63%), Postives = 79/99 (79.80%), Query Frame = -1
Query:  162 VNNKVPGLGLQLDASELNLLYKDKYNAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHGVQW 458
            +NNKVPGLG++LD S+LNLLYK KY  E+ D+YE LLLD I+G+  LF+RSDEL AAW +  P+L+E+++  IAPELY  G RGPVGA+YL AKH V+W
Sbjct:  472 INNKVPGLGMRLDRSDLNLLYKAKYRGEIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLKELEEKKIAPELYPYGSRGPVGAHYLAAKHNVRW 570          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PDC_SPIOL (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Spinacia oleracea GN=G6PD PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.402e-30
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = -1
Query:  162 VNNKVPGLGLQLDASELNLLYKDKYNAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHGVQW 458
            +NNKVPGLG++LD ++LNL Y  +Y  E+ D+YE LLLD I+G+  LF+RSD+L AAW++  P+L+E+++  +APELY  G RGPVGA+YL AKH V+W
Sbjct:  468 INNKVPGLGMRLDRTDLNLCYSTRYRGEIPDAYERLLLDAIEGERRLFIRSDKLDAAWSLFTPLLKELEEKKVAPELYPYGSRGPVGAHYLAAKHNVRW 566          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PD3_ARATH (Glucose-6-phosphate 1-dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=At1g24280 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.391e-30
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = -1
Query:  162 VNNKVPGLGLQLDASELNLLYKDKYNAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHGVQW 458
            +NNKVPGLG++LD S LNLLY  +Y+ E+ D+YE LLLD I+G+  LF+RSDEL AAW +  P+L+EI++    PE Y  G RGPVGA+YL AKH VQW
Sbjct:  494 INNKVPGLGMRLDQSNLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLKEIEEKKTTPEFYPYGSRGPVGAHYLAAKHKVQW 592          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PD1_ARATH (Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=APG1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.391e-30
Identity = 57/99 (57.58%), Postives = 78/99 (78.79%), Query Frame = -1
Query:  162 VNNKVPGLGLQLDASELNLLYKDKYNAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHGVQW 458
            +NNKVPGLG++LD S+LNLLY+ +Y  E+ D+YE LLLD I+G+  LF+RSDEL AAW++  P L+E+++  I PELY  G RGPVGA+YL +K+ V+W
Sbjct:  472 INNKVPGLGMRLDRSDLNLLYRSRYPREIPDAYERLLLDAIEGERRLFIRSDELDAAWDLFTPALKELEEKKIIPELYPYGSRGPVGAHYLASKYNVRW 570          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PD2_ARATH (Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g13110 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 3.123e-30
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = -1
Query:  162 VNNKVPGLGLQLDASELNLLYKDKYNAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHGVQW 458
            +NNKVPGLG++LD S LNLLY  +Y+ E+ D+YE LLLD I+G+  LF+RSDEL AAW++  P+L+EI++    PE Y  G RGPVGA+YL AKH VQW
Sbjct:  491 INNKVPGLGMRLDRSNLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPLLKEIEEKKRIPEYYPYGSRGPVGAHYLAAKHKVQW 589          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PDC_TOBAC (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.024e-29
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = -1
Query:  162 VNNKVPGLGLQLDASELNLLYKDKYNAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHGVQW 458
            +NNKVPGLG++LD S LNLLY  +Y+ E+ D+YE LLLD I+G+  LF+RSDEL AAW++  PVL+E++   I PE Y  G RGP+GA+YL A++ V+W
Sbjct:  491 INNKVPGLGMRLDRSNLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKELEDKKIVPEYYPYGSRGPIGAHYLAARYKVRW 589          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PD_DICDI (Glucose-6-phosphate 1-dehydrogenase OS=Dictyostelium discoideum GN=g6pd-1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.172e-17
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = -1
Query:  171 NKVPGLGLQLDASELNLLYKDKY-NAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHG 452
            +K PGL  +++ +EL+L Y+ ++ N ++ D+YE L+LD I GD++LF+R DEL  AW I  P+L +I+K  I PE Y  G RGP  A  L  K G
Sbjct:  384 SKKPGLENKIEQTELDLSYRHRFENLDLPDAYERLILDSIKGDHNLFVRDDELDVAWQIFTPLLDQIEKEKIKPEPYSFGSRGPKSADELSKKFG 478          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PD5_ARATH (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=ACG9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.173e-15
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = -1
Query:  159 KVPGLGLQLDASELNLLYKDKY-NAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGAYYLWAKHGVQWT 449
            K PGL +Q   SEL+L YK +Y +  + ++YE L+LD I GD   F+R DEL AAW I  P+L  IDK  +    Y+ G RGP  A  L  K G   T
Sbjct:  409 KQPGLEMQTVQSELDLSYKQRYQDVSIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDKGEVKSVPYKQGSRGPAEADQLLKKAGYMQT 506          
BLAST of CN187732 vs. ExPASy Swiss-Prot
Match: G6PD_CERCA (Glucose-6-phosphate 1-dehydrogenase OS=Ceratitis capitata GN=ZW PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  204 KVPGLGLQLDASELNLLYKDKY-NAEVLDSYEHLLLDVIDGDNHLFMRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGP 449
            K PG+   ++ +EL+L Y+ +Y N+ + D+YE L+LDV  G    F+RSDEL+ AW I  PVL EI+ N + P  Y  G RGP
Sbjct:  420 KSPGITFDIEETELDLTYEHRYKNSYLPDAYERLILDVFCGSQMHFVRSDELSEAWRIFTPVLNEIENNKVKPIPYVFGSRGP 502          
The following BLAST results are available for this feature:
BLAST of CN187732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
G6PD4_ARATH9.045e-4681.37Glucose-6-phosphate 1-dehydrogenase 4, chloroplast... [more]
G6PDC_SOLTU1.498e-3262.63Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PDC_SPIOL1.402e-3056.57Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PD3_ARATH2.391e-3059.60Glucose-6-phosphate 1-dehydrogenase 3, chloroplast... [more]
G6PD1_ARATH2.391e-3057.58Glucose-6-phosphate 1-dehydrogenase 1, chloroplast... [more]
G6PD2_ARATH3.123e-3059.60Glucose-6-phosphate 1-dehydrogenase 2, chloroplast... [more]
G6PDC_TOBAC2.024e-2956.57Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PD_DICDI5.172e-1745.26Glucose-6-phosphate 1-dehydrogenase OS=Dictyosteli... [more]
G6PD5_ARATH2.173e-1544.90Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_CERCA1.839e-1445.78Glucose-6-phosphate 1-dehydrogenase OS=Ceratitis c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187732 ID=CN187732; Name=CN187732; organism=Citrus sinensis; type=EST; length=458bp
TGCAGAAATCCCCCTATTAAAACAAGCAAATAACCATCCATCATTTGTTC
ATTACAAAATTAAGTTTAAGGTACTTTTTGACTCCGATGCACGCTTTCAG
CACATCGTTTGCGAGCATAACCCAAATCATCCTATAAGAAGTGTTGCCTC
TAATCTTCGGTCCACTGAACCCCGTGTTTCGCCCAAAGATAATATGCTCC
AACGGGCCCTCTACCACCCAGCTCGTAAAGTTCTGGTGCAATATTGTTCT
TGTCTATTTCTTGTAAAACTGGGTTTAAAATATTCCATGCAGCAGTAAGC
TCATCGCTTCTCATGAAGAGATGGTTGTCGCCATCAATAACATCAAGAAG
AAGATGTTCGTATGAATCAAGCACCTCTGCATTATACTTATCCTTATAGA
GCAAATTAAGCTCTGAAGCATCCAATTGCAAGCCTAATCCTGGAACCTTG
TTGTTGAC
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