CN187731

Overview
NameCN187731
Unique NameCN187731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187731 vs. ExPASy Swiss-Prot
Match: YCBX_ECOLI (Uncharacterized protein ycbX OS=Escherichia coli (strain K12) GN=ycbX PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = -3
Query:  102 IMFFDCYPFMLLSPGSLDALN*LLKEPIPINRFRPNILVDGCEPFSEELWMGIRINNCPFQGVKPGDRCKVPTTNQAPGVAGP--EPSETLRQIRSDKVLGPIQKQQGKIYFGQNLVWKDHLRNGKVLKLGDPVFVM 506
            + F D YP++L +  SL  L       + + +FRPN++V G   + E+ W  IRI +  F  VKP  RC   T +   G   P  EP +TL+  R+        +  G + FGQNL+     RN  V+++GD V ++
Sbjct:  139 LSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRT-------AQDNGDVDFGQNLI----ARNSGVIRVGDEVEIL 264          
BLAST of CN187731 vs. ExPASy Swiss-Prot
Match: MOSC1_XENLA (MOSC domain-containing protein 1, mitochondrial OS=Xenopus laevis GN=mosc1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.022e-12
Identity = 51/140 (36.43%), Postives = 73/140 (52.14%), Query Frame = -3
Query:   96 IMFFDCYPFMLLSPGSLDALN*LLKEPIPINRFRPNILVDGCEPFSEELWMGIRINNCPFQGVKPGDRCKVPTTNQAPGV-AGPEPSETLRQIR-SDKVLGPIQKQQGKIYFGQNLVWKDHLRNGKVLKLGDPVF-VMRK 506
            I + D  P MLLS  S++ALN  L++P+ +  FRP I+  GCE F+E+ W  +R+     + V    RC + T N   GV    EP +TLR  R SD  L  + K      FGQ       +    ++++GDPV+ V RK
Sbjct:  209 IAYPDASPIMLLSETSMEALNSRLEQPVSLANFRPCIVASGCEAFAEDDWDDVRLGATRLKRVMACGRCVLTTVNPNSGVITRKEPLDTLRTFRQSDSSLKEVYKNAP--LFGQYY----GVEQTGIIRVGDPVYRVTRK 342          
BLAST of CN187731 vs. ExPASy Swiss-Prot
Match: MOSC1_HUMAN (MOSC domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MOSC1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = -3
Query:  102 KIMFFDCYPFMLLSPGSLDALN*LLKEPIPINRFRPNILVDGCEPFSEELWMGIRINNCPFQGVKPGDRCKVPTTNQAPGV-AGPEPSETLRQIRSDKVLGPIQKQQGKIY-----FGQNLVWKDHLRNGKVLKLGDPVFVM 509
            +I + D  PF++LS  SL  LN  L++ +    FRPNI++ GC+ ++E+ W  + I +   + V    RC + T +   GV +  EP ETL+  R           + K+Y     FGQ  V    L N   +K+GDPV+++
Sbjct:  204 QIAYSDTSPFLILSEASLADLNSRLEKKVKATNFRPNIVISGCDVYAEDSWDELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKSYRQ------CDPSERKLYGKSPLFGQYFV----LENPGTIKVGDPVYLL 335          
BLAST of CN187731 vs. ExPASy Swiss-Prot
Match: MOSC2_BOVIN (MOSC domain-containing protein 2, mitochondrial OS=Bos taurus GN=MOSC2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 48/143 (33.57%), Postives = 70/143 (48.95%), Query Frame = -3
Query:  102 KIMFFDCYPFMLLSPGSLDALN*LLKEPIPINRFRPNILVDGCEPFSEELWMGIRINNCPFQGVKPGDRCKVPTTNQAPGVAG-PEPSETLRQIRSDKVLGPIQKQQGK------IYFGQNLVWKDHLRNGKVLKLGDPVFVM 509
            ++ + DC P M+LS  SL  LN  +++ + IN FRPNI+V GC  F E+ W  + I N   + +    RC + T +   GV    EP ETL+  R   +  P +K   K      IY+    +          LK+GDPV+ M
Sbjct:  203 QVAYPDCSPVMILSEASLADLNTRMEKKVKINNFRPNIVVTGCSAFEEDTWDELLIGNVEMKKILACPRCIMTTVDPDTGVIDRKEPLETLKSYR---LCDPSEKSIYKSSPLFGIYYSVEKIGS--------LKVGDPVYQM 334          
BLAST of CN187731 vs. ExPASy Swiss-Prot
Match: MOSC1_MOUSE (MOSC domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mosc1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = -3
Query:  102 KIMFFDCYPFMLLSPGSLDALN*LLKEPIPINRFRPNILVDGCEPFSEELWMGIRINNCPFQGVKPGDRCKVPTTNQAPGVAG-PEPSETLRQIRSDKVLGPI-QKQQGKI-YFGQNLVWKDHLRNGKVLKLGDPVFVM 509
            ++ + D  PF++LS  SL+ LN  L+  +    FRPNI++ GC  ++E+ W  + I +   + V    RC + T +   G++   EP ETL+  R   +  P  Q   GK+  FGQ       L N   +++GDPV+++
Sbjct:  207 QVAYSDASPFLVLSEASLEDLNSRLERRVKATNFRPNIVISGCGVYAEDSWNEVLIGDVELKRVMACTRCLLTTVDPDTGISDRKEPLETLKSYR---LCDPSEQALYGKLPIFGQYFA----LENPGTIRVGDPVYLL 338          
The following BLAST results are available for this feature:
BLAST of CN187731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YCBX_ECOLI7.825e-1332.85Uncharacterized protein ycbX OS=Escherichia coli (... [more]
MOSC1_XENLA1.022e-1236.43MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC1_HUMAN2.277e-1232.39MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC2_BOVIN2.974e-1233.57MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC1_MOUSE1.927e-1131.65MOSC domain-containing protein 1, mitochondrial OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004O18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187731 ID=CN187731; Name=CN187731; organism=Citrus sinensis; type=EST; length=511bp
CAACAGAGTTTAATTTTTTGGCCCCGACAACAACATTATGATTAATAACA
AATATTCAATAGAGCTCAAGCGGCGGCCGCAGCTGCAAAATTGACCTTCC
TCATGACAAAAACCGGATCCCCAAGTTTAAGCACCTTTCCGTTACGAAGG
TGGTCCTTCCAAACCAAGTTCTGCCCAAAGTATATCTTTCCCTGCTGTTT
TTGAATTGGACCCAAAACTTTATCTGACCGAATTTGCCTTAAGGTTTCAC
TTGGTTCGGGACCAGCAACACCGGGGGCTTGATTGGTAGTGGGAACCTTA
CAGCGGTCACCCGGCTTAACACCTTGAAATGGGCAATTGTTTATTCGGAT
GCCCATCCATAATTCCTCAGAAAAGGGTTCACAACCATCAACAAGGATGT
TGGGGCGAAAACGGTTAATTGGAATAGGCTCCTTGAGAAGCTAATTAAGT
GCATCCAAAGATCCCGGAGACAACAGCATAAATGGATAACAGTCAAAAAA
CATTATTTTCT
back to top