CK938472

Overview
NameCK938472
Unique NameCK938472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:141..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   67 MSDTCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTCG 264
            MSDTCGNC+CAD++QCVKKGSSY AD +ET+ S ++  VVMD  AA+ +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.679e-18
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   67 MSDTCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTC 261
            MSD CGNC+CAD SQCVKKG+S   D VETD S++   VVM V AA++ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   76 TCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTCGS 267
            TCGNC+C D+SQCVKKG+SY  D VET+ S+V   V++  +AA+ +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDE-VIVAAEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.873e-16
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   67 MSDTCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTC 261
            MS  C NC+C+D SQC KKG S+    VET+   + T V+MD  AA+  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   67 MSDTCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTCG 264
            MS  C NC+CAD +QCVKKG+SY    VET+   + T V +D  AA+ +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDT-VFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.807e-15
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   67 MSDTCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTCG 264
            MSD CGNC+CAD+SQCVKKG+SY    VE + S        +V A +  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.807e-15
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   67 MSDTCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTCG 264
            MSD CGNC+CAD+SQCVKKG+SY    VE + S        +V A +  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   67 MSDTCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTCG 264
            MSD CGNC+CAD+SQCVKKG+SY    V+ + S     +  +V   + +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK938472 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   67 MSDTCGNCNCADRSQCVKKGSSYAADFVETDLSFVSTGVVMDVQAADTEGNCKCGPTCACVNCTCG 264
            MSD CG+C+CAD+SQCVKKG+SY    V+ + S     +  +V   + +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK938472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA3.798e-2366.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE3.679e-1864.62Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC8.195e-1856.25Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV5.873e-1655.38Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.232e-1554.55Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ3.807e-1551.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.807e-1551.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ3.563e-1346.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.354e-1245.45Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004442_C07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938472 ID=CK938472; Name=CK938472; organism=Citrus sinensis; type=EST; length=393bp
GGGGTTTCGTACAATAAAGATCCCTCTATTTCCAGTTTTAAATTCCAAGT
TCTAAGCTCAATCAACATGTCGGACACCTGCGGGAACTGCAACTGCGCTG
ACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTC
GAGACTGACTTGAGCTTTGTCAGCACCGGTGTTGTCATGGACGTTCAGGC
TGCTGATACTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGA
ACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAAAAATAA
GAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAATAATGTAAGGG
TGATTAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATGATG
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