CN187729

Overview
NameCN187729
Unique NameCN187729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2617 contig Csv1_Contig2617:619..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.242e-53
Identity = 101/166 (60.84%), Postives = 132/166 (79.52%), Query Frame = -3
Query:  271 LNIKDEEMREFFEN--GVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRI 762
            L IK EE+ + F++   VQ+MRMNYYPPCPQP++V+GL+PHSD+  LT+L+Q+N+VEGLQ+KKDGKW+PV PLP+AFIVNIGD LEIITNGTYRSIEHR VVNS +ERLS+AT ++V    EV PA SL+  +    F+R+ ++EY    ++R L GK+ LD+LRI
Sbjct:  193 LEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.391e-32
Identity = 61/131 (46.56%), Postives = 90/131 (68.70%), Query Frame = -3
Query:  271 MGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRI 663
            +GLSPHSDA  LT+L+Q+NEV GL +KKD KW+P+ P+  AF+VNIGD +EI++NG Y+SIEHRAV+N+ +ERLS+A  +   Y  ++ P   L+ E     ++ +  E+Y       +L GKS LD +++
Sbjct:  223 LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKENGVK-YKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          

HSP 2 Score: 28.8758 bits (63), Expect = 4.391e-32
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -2
Query:  659 SNEDELLPSMSSAREGYG 712
            + EDELLPSMSS  EG G
Sbjct:  207 NREDELLPSMSSCGEGLG 224          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 67/154 (43.51%), Postives = 92/154 (59.74%), Query Frame = -3
Query:  301 LNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRYARELR 762
            L ++    REFF +    MR NYYPPCP+PE+ +G  PH D  ALTILLQ ++V GL+V  DG+W PV+P+P A ++NIGDT   ++NG Y+S  HRAVVN  +ER S+A     R D  V P  S  + +  P F    +  + +  Y  + R
Sbjct:  211 LGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTR 363          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 67/154 (43.51%), Postives = 92/154 (59.74%), Query Frame = -3
Query:  301 LNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRYARELR 762
            L ++    REFF +    MR NYYPPCP+PE+ +G  PH D  ALTILLQ ++V GL+V  DG+W PV+P+P A ++NIGDT   ++NG Y+S  HRAVVN  +ER S+A     R D  V P  S  + +  P F    +  + +  Y  + R
Sbjct:  211 LGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTR 363          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 68/174 (39.08%), Postives = 92/174 (52.87%), Query Frame = -3
Query:  256 EVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTP---PLFRRMRIEEYFRSRYARELRGKSQLDSLRIQHGQG 768
            E L +     R FFE     MR+NYYPPC +P + +G  PH D  +LTIL Q N V GLQV  +G+W  + P  DAF+VNIGDT   ++NG Y+S  HRAVVNS   R S+A       D  V P  +L+    P   P F    + ++ +  Y  +++      S  +Q  QG
Sbjct:  184 ESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWIVQQQQG 356          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 68/174 (39.08%), Postives = 92/174 (52.87%), Query Frame = -3
Query:  256 EVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTP---PLFRRMRIEEYFRSRYARELRGKSQLDSLRIQHGQG 768
            E L +     R FFE     MR+NYYPPC +P + +G  PH D  +LTIL Q N V GLQV  +G+W  + P  DAF+VNIGDT   ++NG Y+S  HRAVVNS   R S+A       D  V P  +L+    P   P F    + ++ +  Y  +++      S  +Q  QG
Sbjct:  184 ESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWIVQQQQG 356          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 53/130 (40.77%), Postives = 86/130 (66.15%), Query Frame = -3
Query:  325 RMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLI---SEKTPPLFRRMRIEEYFR 705
            +++ YPPCP PE + GL  H+DA  L +L Q ++V GLQ+ KDG+WI V P+  + ++N+GD LE+ITNG YRS+EHR +  +   R+S+A+ Y+   D  +YPA +L+   +E+   ++ +   E+Y +
Sbjct:  158 KVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEKEAEEKNQVYPKFVFEDYMK 287          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.207e-26
Identity = 60/175 (34.29%), Postives = 100/175 (57.14%), Query Frame = -3
Query:  265 EVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGE------VY-PASSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRIQH 768
            E L +K   + E        +  +YYP CPQPE   G S HSD+  LTIL+Q +++ GLQ+  + +WI V  +P A ++NI D L++ITN  ++S+EHR + N V  R+SVA  + ++   +      +Y P   LISE+ PP+++ + ++++   R+A+     S L   R+ +
Sbjct:  228 EALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQ-DQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRLNN 401          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/129 (43.41%), Postives = 84/129 (65.12%), Query Frame = -3
Query:  331 VQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEY 717
            V  +++NYYPPCP+P+  +G+  H+D + +TIL+  NEV+GLQV KDG W  V  +P+A IV+IGD +EI++NG Y+S+ HR  VN  + R+S         + EV P   L+SE  PP F+  + ++Y
Sbjct:  211 VYLLKINYYPPCPRPDLALGVVAHTDMSYITILVP-NEVQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPSEHEVGPIPKLLSEANPPKFKTKKYKDY 338          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 67/173 (38.73%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  259 EVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTP---PLFRRMRIEEYFRSRYARELRGKSQLDSLRIQHGQ 768
            E L +     R FFE     MR+NYYPPC +P + +G  PH D  +LTIL Q N V GLQV  +G+W  + P  DAF+VNIGDT   ++NG Y+S  HRAVVNS   R S+A       D  V P  +L+    P   P F    + ++ +  Y  +++      S  +Q  Q
Sbjct:  184 ESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWIVQQQQ 355          
The following BLAST results are available for this feature:
BLAST of CN187729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
SRG1_ARATH1.242e-5360.84Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA4.391e-3246.56S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAOX2_ORYSJ2.785e-2943.51Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.785e-2943.51Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
GAO1B_WHEAT9.907e-2739.08Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT1.294e-2639.08Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
ACCO_PRUMU1.294e-2640.771-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
DV4H_CATRO2.207e-2634.29Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
FLS_PETHY6.422e-2643.41Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
GAO1D_WHEAT8.387e-2638.73Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187729 ID=CN187729; Name=CN187729; organism=Citrus sinensis; type=EST; length=770bp
CTTTTTTGAATAGCACCACTATATATCATGGGAAGATTCCAGGCATAAGT
CTGCAATTCTTAAGATTCTTACATGGTCTATTCAGTATCTCAAATGATAG
AGCTATTAGAAACACAACGACCCTAGCATAGCAGGTTATACCACAGTATT
CATAGAACTTATTTCTTATTTTCAGTTCCACACACAATCTTAATGGCAAG
GCCCTTCAGAGTTTTTGTACCAAACTCTTTAGTTATCCGAAATAAACTTA
TACTAGCCTTGACCATGTTGAATTCTCAGGGAATCCAGCTGAGATTTTCC
CCTAAGCTCACGAGCATACCGGCTCCTAAAGTATTCTTCAATTCTCATTC
TTCTAAACAAAGGAGGAGTTTTTTCAGAGATCAAACTGGAGGCAGGATAC
ACTTCACCATCATATCTCACTGAGTAAACTGTGGCAACGGAAAGTCTTTC
CTGTACAGAGTTTACAACTGCACGATGCTCAATGCTACGGTATGTCCCAT
TGGTTATAATCTCCAATGTGTCTCCAATGTTGACAATGAAAGCATCCGGG
AGTGGGGTAACAGGAATCCACTTTCCATCCTTCTTTACCTGGAGACCCTC
CACTTCATTAAGTTGTAGCAGAATGGTAAGTGCAGCTGCATCAGAATGTG
GCGACAGGCCCATAACCTTCTCGGGCTGAGGACATGGAGGGTAATAATTC
ATCCTCATTGCTTGCACTCCATTTTCAAAGAATTCTCTCATTTCTTCATC
TTTGATATTTAACACTTCTC
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