CK938468

Overview
NameCK938468
Unique NameCK938468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            DDHWIFWVGPFIGAALAALYHQ+VIRAIPFKS
Sbjct:  254 DDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            DDHWIFWVGPFIGAALAALYHQ+VIRAIPFKS
Sbjct:  254 DDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            DDHWIFWVGPFIGAALAA+YHQVVIRAIPFKS
Sbjct:  255 DDHWIFWVGPFIGAALAAIYHQVVIRAIPFKS 286          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            DDHWIFWVGPFIGAALAALYHQ+VIRAIPFKS
Sbjct:  253 DDHWIFWVGPFIGAALAALYHQLVIRAIPFKS 284          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            +DHWIFWVGPFIGAALAALYHQVVIRAIPFKS
Sbjct:  257 NDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 288          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            +DHWIFWVGPFIGAALAA+YHQV+IRAIPFKS
Sbjct:  256 NDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 287          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            DDHW+FWVGPFIGAALAALYH VVIRAIPFKS
Sbjct:  253 DDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            DDHW+FWVGPFIGAALAALYH VVIRAIPFKS
Sbjct:  253 DDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 3
Query:    9 DHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            DHWIFWVGPFIGAALAA+YHQV+IRAIPFKS
Sbjct:  260 DHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 290          
BLAST of CK938468 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 3
Query:    6 DDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 101
            DDHW+FWVGPFIGAALAALYH +VIRAIPFKS
Sbjct:  253 DDHWVFWVGPFIGAALAALYHVIVIRAIPFKS 284          
The following BLAST results are available for this feature:
BLAST of CK938468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PIP15_ARATH1.029e-1296.88Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH1.029e-1296.88Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP12_ORYSJ1.343e-1296.88Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP13_ARATH1.754e-1296.88Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP2_PEA2.993e-1296.88Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_MAIZE6.667e-1290.63Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP11_VICFA6.667e-1293.75Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH6.667e-1293.75Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP13_MAIZE8.707e-1293.55Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ARATH8.707e-1290.63Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938468 ID=CK938468; Name=CK938468; organism=Citrus sinensis; type=EST; length=403bp
GGGGGGATGACCATTGGATTTTCTGGGTGGGACCATTCATTGGAGCAGCA
CTTGCAGCTTTGTACCACCAGGTTGTGATCAGAGCCATTCCCTTCAAATC
AAGCTGATGGTCTTATGAACGGTCGTGATTGCTGATGCATTTGTTTATGG
CTGTCGTTGGTGGTTCTGTTTTATATTTTCGATTATCCCAAGTCCATGCA
TTTTCGGTTCGTTAAATTTTCTGGTTGTTTGGTCTTGTGTATGAATTTTC
TGTAATGCCTATGCACAAAGAAGCCGCTGATACTGGCCAAAGTTGGCACC
GGTAGTACCAGCATTTGTAATTTAAAAAAAAAAAGAAGAAAAGCTGCGGC
TGCAATTCCAAGCTTCCTATTTTACAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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