CK938456

Overview
NameCK938456
Unique NameCK938456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3499 contig Csv1_Contig3499:128..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.767e-68
Identity = 121/210 (57.62%), Postives = 145/210 (69.05%), Query Frame = 1
Query:    4 IAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            IAI+Y +  AIPFGTMV V  I  F+  PL L+GT++GRN SG PN PCRV  +PRPIPEKKW++ P+V+  +GG+LPFGSIFIEMYF+FTS W YK+YYVYGFM                   YFLLNAE+Y WQWTSF SAASTA             KTKM G FQTSFYFGY  +F   LGI+CGA+GY+G++ FVR+IY N+K D
Sbjct:  378 IAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 7.767e-68
Identity = 121/210 (57.62%), Postives = 145/210 (69.05%), Query Frame = 1
Query:    4 IAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            IAI+Y +  AIPFGTMV V  I  F+  PL L+GT++GRN SG PN PCRV  +PRPIPEKKW++ P+V+  +GG+LPFGSIFIEMYF+FTS W YK+YYVYGFM                   YFLLNAE+Y WQWTSF SAASTA             KTKM G FQTSFYFGY  +F   LGI+CGA+GY+G++ FVR+IY N+K D
Sbjct:  380 IAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.429e-37
Identity = 75/211 (35.55%), Postives = 107/211 (50.71%), Query Frame = 1
Query:    1 TIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            T+AI + S  A+P  TM+ V  IW F+ FPL ++G + GR  S     PCR K  PR +P  +WY       ++ G LPF +I+IE++++F S W +  Y +YG +                   YF L+ E++ W W SF +  ST               + M G  Q +FYF Y L+ C    IL G VG+  S +FV+RIYRN+K D
Sbjct:  377 TVAITWHSTVALPILTMIEVITIWLFVGFPLTVVGGIAGRRLSENFEAPCRTKNFPREVPPIQWYRRLPCQILIAGFLPFSAIYIELFYIFNSVWGHSTYTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.596e-36
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:   19 GSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            GS AAIPFGT+V +  +W  IS PL  +G   G     A  +P R   IPR IPE+ +Y  P    +MGG+LPFG IFI+++F+  S W++++YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  460 GSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFK-KNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.596e-36
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:   19 GSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            GS AAIPFGT+V +  +W  IS PL  +G   G     A  +P R   IPR IPE+ +Y  P    +MGG+LPFG IFI+++F+  S W++++YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  460 GSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFK-KNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.596e-36
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:   19 GSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            GS AAIPFGT+V +  +W  IS PL  +G   G     A  +P R   IPR IPE+ +Y  P    +MGG+LPFG IFI+++F+  S W++++YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  459 GSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFK-KNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.596e-36
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:   19 GSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            GS AAIPFGT+V +  +W  IS PL  +G   G     A  +P R   IPR IPE+ +Y  P    +MGG+LPFG IFI+++F+  S W++++YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  460 GSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFK-KNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.641e-33
Identity = 71/204 (34.80%), Postives = 105/204 (51.47%), Query Frame = 1
Query:   22 SLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            S  A+PF TMV +  +W  IS PL  LG   G       +NP R   IPR IPE++WY+   V  +M G+LPFG++FIE++F+F++ W  + YY++GF+                   YF L AE+Y W W +F  +  +A             K  +  F  +  YFGYT +  L   +L G +G+  + +FVR+IY  +K D
Sbjct:  441 SSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.641e-33
Identity = 71/204 (34.80%), Postives = 105/204 (51.47%), Query Frame = 1
Query:   22 SLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            S  A+PF TMV +  +W  IS PL  LG   G       +NP R   IPR IPE++WY+   V  +M G+LPFG++FIE++F+F++ W  + YY++GF+                   YF L AE+Y W W +F  +  +A             K  +  F  +  YFGYT +  L   +L G +G+  + +FVR+IY  +K D
Sbjct:  440 SSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CK938456 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.641e-33
Identity = 71/204 (34.80%), Postives = 105/204 (51.47%), Query Frame = 1
Query:   22 SLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSSWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 633
            S  A+PF TMV +  +W  IS PL  LG   G       +NP R   IPR IPE++WY+   V  +M G+LPFG++FIE++F+F++ W  + YY++GF+                   YF L AE+Y W W +F  +  +A             K  +  F  +  YFGYT +  L   +L G +G+  + +FVR+IY  +K D
Sbjct:  441 SSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
The following BLAST results are available for this feature:
BLAST of CK938456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TM9S3_MOUSE7.767e-6857.62Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S3_HUMAN7.767e-6857.62Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
PHG1B_DICDI5.429e-3735.55Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S2_RAT4.596e-3637.07Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB4.596e-3637.07Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE4.596e-3637.07Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN4.596e-3637.07Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT3.641e-3334.80Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB3.641e-3334.80Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE3.641e-3334.80Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_E11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938456 ID=CK938456; Name=CK938456; organism=Citrus sinensis; type=EST; length=842bp
ACAATTGCTATATTCTACGGATCTCTAGCCGCTATTCCCTTTGGCACAAT
GGTGGTTGTCTTTGTAATTTGGGCTTTCATTTCTTTCCCTCTGGCACTTC
TTGGCACAGTTGTTGGAAGAAATTGGAGTGGTGCTCCAAATAACCCATGC
CGAGTGAAGACCATTCCTCGCCCAATTCCTGAGAAGAAATGGTATCTCAC
ACCCTCTGTGGTCTCAATGATGGGAGGGCTGCTACCTTTTGGCAGTATAT
TCATTGAGATGTATTTTGTCTTCACATCCTCTTGGAATTACAAGGTCTAC
TATGTGTATGGGTTCATGCTGTTGGTTTTTGTGATTCTCATCATTGTGAC
TGTTTGTGTCACAATTGTGGGAACATATTTCCTGCTAAATGCTGAGAATT
ATCACTGGCAATGGACATCATTCTTCTCTGCTGCCTCAACGGCTGTCTAT
GTGTATTTGTACTCAATATATTACTACTATGTGAAGACTAAGATGTCAGG
CTTCTTCCAGACTAGCTTCTATTTTGGCTACACTTTGATGTTTTGTCTTG
GTTTAGGAATCCTCTGTGGAGCTGTTGGTTATCTCGGCTCTAATTTGTTT
GTGAGGAGGATTTATAGAAACATCAAGTGTGACTAGAACGTTACCAAGGA
AAAACCGACCTGAGTGTGCTTACCTGAGAATTTTTGGCTGAGGCAATAAA
ATTTAGAGAGGAAGCCTTGGGTCAGTATATGGGGGACCTTCCAGTATCTG
CAGATGAAAATCACAGGGATAGAGGATATTATGAGGAGCCCTGNNNTTTT
TCTAATATTTTCCCCGGCTGGGAGTGAAAGCCTAAGCCTTAA
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