CK938452

Overview
NameCK938452
Unique NameCK938452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938452_ssr14 microsatellite CK938452_ssr14:14..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2183 contig Csv1_Contig2183:70..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: M2OM_DICDI (Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 80/210 (38.10%), Postives = 111/210 (52.86%), Query Frame = 1
Query:   52 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTA 681
            +K FV GG+A +++   THP+D +KVRMQLQGE   V                                    P+ G + + V I QTEG   L+ G+SA++LRQ  Y+TTR GLYD++K     KD   +  ++K                PAD+ MVRMQADG+LP   RRNYK+V D I ++ ++EG+ SLW+G S  + RAM +TA
Sbjct:   25 LKQFVIGGLAGMLSSAFTHPIDSLKVRMQLQGEGTGVG-----------------------------------PKRGALKMLVHINQTEGFFTLYKGLSASLLRQATYTTTRFGLYDLIKDI-VAKDDKPLPFTQKIMVGMLSGAGGAIVGTPADLTMVRMQADGKLPFNLRRNYKNVFDGIFRISKEEGIISLWKGCSPNLIRAMFMTA 198          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: M2OM_MOUSE (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Mus musculus GN=Slc25a11 PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 1
Query:   61 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTA 681
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+ ++                             I +TEG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K                PA+VA++RM ADGRLP+ QRR YK+V +A+ ++ R+EGV +LWRG   T+ RA++V A
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKTEGLKGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRRGYKNVFNALVRIAREEGVPTLWRGCIPTMARAVVVNA 196          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: M2OM_HUMAN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 71/207 (34.30%), Postives = 105/207 (50.72%), Query Frame = 1
Query:   61 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTA 681
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+ ++                             I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K                PA+VA++RM ADGRLP+ QRR YK+V +A+ ++ R+EGV +LWRG   T+ RA++V A
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAVVVNA 196          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: M2OM_BOVIN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 70/207 (33.82%), Postives = 104/207 (50.24%), Query Frame = 1
Query:   61 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTA 681
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+                              + I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K                PA+VA++RM ADGRLP  QRR YK+V +A+ +++++EGV +LWRG   T+ RA++V A
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHAL-----------------------------ISILRAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPVDQRRGYKNVFNALFRIVQEEGVPTLWRGCIPTMARAVVVNA 196          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: M2OM_RAT (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Rattus norvegicus GN=Slc25a11 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 70/207 (33.82%), Postives = 104/207 (50.24%), Query Frame = 1
Query:   61 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVTA 681
            F+ GG+A + A     PLDL+  RMQL GE     +   S      FH+ ++                             I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K                PA+VA++RM ADGRLP+ QRR YK+V +A+ ++ R+EGV +LWRG   T+ RA++V A
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVXNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGPPAEVALIRMTADGRLPADQRRGYKNVFNALIRIAREEGVPTLWRGCIPTMARAVVVNA 196          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: M2OM_NEUCR (Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa GN=NCU10732 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 66/206 (32.04%), Postives = 101/206 (49.03%), Query Frame = 1
Query:   61 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNR---MTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAM 669
            F+ GG++ +VA     P+D+IKVR+QL GE  A                                     P+  P+ V   I  +     L++G+SA +LRQ +Y+T R+G +D    + + +   +   +    +               NPAD+A++RMQ+DG  P A+R+NYKSVIDA+  + R EGVA+LW G++ TV RAM
Sbjct:   45 FINGGLSGMVATTVIQPIDMIKVRIQLAGEGKAGG-----------------------------------PKPTPLGVTRDIIASGKAMDLYTGLSAGLLRQAVYTTARIGCFDTFMSRLSARAKEKGQSVGFKERASAGLAAGGLAAMIGNPADLALIRMQSDGLKPVAERKNYKSVIDALGGIARNEGVAALWAGAAPTVVRAM 215          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: DIC_HUMAN (Mitochondrial dicarboxylate carrier OS=Homo sapiens GN=SLC25A10 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 57/203 (28.08%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   70 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVT 678
            GG+AS  A C THPLDL+KV +Q Q E                                         ++    + +++ +T+G+ AL+SG+SA++ RQ  YS TR  +Y+ ++ +        +    K                PAD+  VRMQ D +LP  QRRNY   +D + ++ R+EG+  L+ G+++  +R  +VT
Sbjct:   13 GGLASCGAACCTHPLDLLKVHLQTQQE----------------------------------------VKLRMTGMALRVVRTDGILALYSGLSASLCRQMTYSLTRFAIYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAGGFVGTPADLVNVRMQNDVKLPQGQRRNYAHALDGLYRVAREEGLRRLFSGATMASSRGALVT 175          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: DIC_MOUSE (Mitochondrial dicarboxylate carrier OS=Mus musculus GN=Slc25a10 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 56/203 (27.59%), Postives = 92/203 (45.32%), Query Frame = 1
Query:   70 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIVT 678
            GG+AS  A C THPLDL+KV +Q Q E                                         ++    + +++ +T+G  AL++G+SA++ RQ  YS TR  +Y+ ++   T      +    K                PAD+  VRMQ D +LP +QRRNY   +D + ++ R+E +  L+ G+++  +R  +VT
Sbjct:   12 GGLASCGAACCTHPLDLLKVHLQTQQE----------------------------------------VKLRMTGMALQVVRTDGFLALYNGLSASLCRQMTYSLTRFAIYETMRDYMTKDSQGPLPFYNKVLLGGISGLTGGFVGTPADLVNVRMQNDMKLPPSQRRNYSHALDGLYRVAREESLRKLFSGATMASSRGALVT 174          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: KMCP1_XENTR (Kidney mitochondrial carrier protein 1 OS=Xenopus tropicalis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 68/207 (32.85%), Postives = 94/207 (45.41%), Query Frame = 1
Query:   55 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIV 675
            K F+ GG+ASI A C T P+DL K R+Q+QG+                  +N A               E+  R G +   V+I++ EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D   +  TL                  NP DV  +RMQA G L          +I     + +QEG   LW+G SLT  RA IV
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQ------------------ANDAKY------------KEIRYR-GMLHAIVRIWKEEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDE-TLVINVFCGVLSGVVSSCIANPTDVLKIRMQAQGSLIQG------GMIGNFINIYQQEGTRGLWKGVSLTAQRAAIV 175          
BLAST of CK938452 vs. ExPASy Swiss-Prot
Match: KMCP1_XENLA (Kidney mitochondrial carrier protein 1 OS=Xenopus laevis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 66/207 (31.88%), Postives = 96/207 (46.38%), Query Frame = 1
Query:   55 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPSAQRRNYKSVIDAIAQMLRQEGVASLWRGSSLTVNRAMIV 675
            K F+ GG+ASI A C T P+DL K R+Q+QG+                         P+++ +      E+  R G +   V+I++ EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D   +  TL                  NP DV  +RMQA G +          +I     + +QEG   LW+G SLT  RA IV
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQ-------------------------PNDAKY-----KEIRYR-GMMHAIVRIWREEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDE-TLVLNAFCGVLSGVVSSCIANPTDVLKIRMQAQGNVMQG------GMIVNFINIYQQEGTRGLWKGVSLTAQRAAIV 175          
The following BLAST results are available for this feature:
BLAST of CK938452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
M2OM_DICDI4.092e-3138.10Probable mitochondrial 2-oxoglutarate/malate carri... [more]
M2OM_MOUSE8.831e-2634.78Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_HUMAN4.383e-2534.30Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_BOVIN1.665e-2433.82Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_RAT3.710e-2433.82Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_NEUCR2.036e-2232.04Putative mitochondrial 2-oxoglutarate/malate carri... [more]
DIC_HUMAN5.544e-2028.08Mitochondrial dicarboxylate carrier OS=Homo sapien... [more]
DIC_MOUSE4.693e-1927.59Mitochondrial dicarboxylate carrier OS=Mus musculu... [more]
KMCP1_XENTR3.973e-1832.85Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]
KMCP1_XENLA8.851e-1831.88Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_E06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938452 ID=CK938452; Name=CK938452; organism=Citrus sinensis; type=EST; length=681bp
TTTTTTTTTTTTAATTATTATTATTATTATTGTTATTTTTAAATCATGGG
TGTTAAAGGATTTGTTGAGGGCGGAATTGCTTCAATTGTAGCTGGCTGCT
CTACACATCCTCTCGATCTAATTAAAGTTCGCATGCAACTCCAAGGCGAA
AACGTCGCCGTTCCCCAGCAAGTCCACTCTCTCCGTCCGGCTCTGCCTTT
TCATTCCAACTCAGCCACCGTCTTTCCCTCTAATTCCATCCATATCCCCA
CCACCGCACCAGAGCTGCCGCCACGTGTCGGTCCTATCTCCGTCGGAGTC
AAGATCTTTCAAACCGAAGGCGTCGCCGCTTTGTTCTCTGGCGTTTCCGC
CACCGTGCTGAGACAAACGTTGTACTCCACCACTCGCATGGGGCTTTACG
ATGTGCTCAAACAAAAGTGGACTGACAAAGACTCCAACCGCATGACGTTG
AGCCGCAAAGTAGCGGCCGGTTTGATCGCCGGAGCAGTTGGGGCCACCGT
TGGCAACCCCGCTGACGTGGCAATGGTCCGCATGCAAGCCGACGGCCGCC
TCCCATCGGCTCAGCGGCGTAACTACAAGAGCGTAATCGACGCGATCGCG
CAAATGTTGAGGCAAGAGGGGGTCGCCAGTCTTTGGCGCGGGTCATCGCT
GACGGTGAACCGGGCGATGATCGTGACGGCG
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