CK938443

Overview
NameCK938443
Unique NameCK938443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_ARATH (ATP synthase subunit 9, mitochondrial OS=Arabidopsis thaliana GN=ATP9 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 46/68 (67.65%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   87 MKKRDENSQPEMLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            M KR+ NSQPEMLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MTKREYNSQPEMLEGAKLIGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 68          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_TOBAC (ATP synthase subunit 9, mitochondrial OS=Nicotiana tabacum GN=ATP9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.913e-12
Identity = 39/57 (68.42%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_SOLTU (ATP synthase subunit 9, mitochondrial OS=Solanum tuberosum GN=ATP9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.913e-12
Identity = 39/57 (68.42%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_SOLLC (ATP synthase subunit 9, mitochondrial OS=Solanum lycopersicum GN=ATP9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.913e-12
Identity = 39/57 (68.42%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_PETHY (ATP synthase subunit 9, mitochondrial OS=Petunia hybrida GN=ATP9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.913e-12
Identity = 39/57 (68.42%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_OENBI (ATP synthase subunit 9, mitochondrial OS=Oenothera biennis GN=ATP9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.913e-12
Identity = 39/57 (68.42%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_WHEAT (ATP synthase subunit 9, mitochondrial OS=Triticum aestivum GN=ATP9 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_ORYSJ (ATP synthase subunit 9, mitochondrial OS=Oryza sativa subsp. japonica GN=ATP9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_ORYSI (ATP synthase subunit 9, mitochondrial OS=Oryza sativa subsp. indica GN=ATP9 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CK938443 vs. ExPASy Swiss-Prot
Match: ATP9_MAIZE (ATP synthase subunit 9, mitochondrial OS=Zea mays GN=ATP9 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGSALTE 290
            MLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILG ALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
The following BLAST results are available for this feature:
BLAST of CK938443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ATP9_ARATH2.005e-1667.65ATP synthase subunit 9, mitochondrial OS=Arabidops... [more]
ATP9_TOBAC3.913e-1268.42ATP synthase subunit 9, mitochondrial OS=Nicotiana... [more]
ATP9_SOLTU3.913e-1268.42ATP synthase subunit 9, mitochondrial OS=Solanum t... [more]
ATP9_SOLLC3.913e-1268.42ATP synthase subunit 9, mitochondrial OS=Solanum l... [more]
ATP9_PETHY3.913e-1268.42ATP synthase subunit 9, mitochondrial OS=Petunia h... [more]
ATP9_OENBI3.913e-1268.42ATP synthase subunit 9, mitochondrial OS=Oenothera... [more]
ATP9_WHEAT1.139e-1166.67ATP synthase subunit 9, mitochondrial OS=Triticum ... [more]
ATP9_ORYSJ1.139e-1166.67ATP synthase subunit 9, mitochondrial OS=Oryza sat... [more]
ATP9_ORYSI1.139e-1166.67ATP synthase subunit 9, mitochondrial OS=Oryza sat... [more]
ATP9_MAIZE1.139e-1166.67ATP synthase subunit 9, mitochondrial OS=Zea mays ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_F06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938443 ID=CK938443; Name=CK938443; organism=Citrus sinensis; type=EST; length=375bp
GGGGACGTGGGCAAACCAAGTACGATGCCCAAGAGAAAAGGAACGAGGGG
AAGAATCGACGAGAAATCCATAACAAAAAATCGTGAATGAAAAAGCGTGA
CGAGAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATTAATGGGTGCCG
GAGCTGCTACAATTGCTTTAGCGGGAGCTGCTGTCGGTATTGGAAACGTG
TTCAGTTCTTTGATCCATTCCGTGGCACGAAATCCATCATTGGCTAAACA
ATTATTTGGTTATGCCATTTTGGGCTCTGCTCTAACCGAAGCTATTGCAT
TGTTTGCCCTAATGATGGCCTTTTTGATCTTATTCGTCTTCTGATTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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