CK938373

Overview
NameCK938373
Unique NameCK938373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10319 contig Csv1_Contig10319:120..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.037e-81
Identity = 147/257 (57.20%), Postives = 185/257 (71.98%), Query Frame = 1
Query:   55 MAATSYYFLLLILTFVTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRR--GNDNVLANLDRQTPTCFDNLYYKNLL 819
            MA++S+  +++ L  +      +++QLSTN+Y  TCPK    V++G+ +A+  E R+GASLLRL FHDCFVNGCD SVLLDDT++F GE+TAVPN NS RG NV+D IK+ +E  CP VVSCADI+AIA RDSVV+ GGP W V+LG               IPPPTS+LS LIS F AQGLS ++MVAL+G HT+G+ARCTSFR  IYN++NID+SFA++ Q  CP      DN LA LD QTPT FDN YYKNL+
Sbjct:    1 MASSSFSIVVVALGVLALFAGSSSAQLSTNFYSKTCPKVFDTVKSGVQSAVSKERRMGASLLRLFFHDCFVNGCDASVLLDDTSSFTGEQTAVPNKNSIRGLNVIDNIKSQVESVCPGVVSCADIIAIAARDSVVILGGPDWDVKLGRRDSKTASLSGANNNIPPPTSSLSNLISKFQAQGLSTRDMVALSGAHTIGQARCTSFRARIYNETNIDSSFAKTRQASCPSASGSGDNNLAPLDLQTPTTFDNYYYKNLI 257          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER52_ARATH (Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.412e-74
Identity = 140/255 (54.90%), Postives = 180/255 (70.59%), Query Frame = 1
Query:   79 LLLILTFVTATLDQANS------QLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRR--GNDNVLANLDRQTPTCFDNLYYKNLL 819
            L+ IL  V   L Q ++      QL+TN+Y ++CP  LS V+  + +A+ +E R+GAS+LRL FHDCFVNGCDGS+LLDDT++F GE+ A PN NSARGFNV+D IK+ +EKACP VVSCADILAIA RDSVV  GGP+W V++G               IP PTS+LS LISSFSA GLS ++MVAL+G HT+G++RCT+FR  IYN++NI+ +FA + Q+ CPR     D  LA LD  T   FDN Y+KNL+
Sbjct:    6 LISILVLVVTLLLQGDNNYVVEAQLTTNFYSTSCPNLLSTVQTAVKSAVNSEARMGASILRLFFHDCFVNGCDGSILLDDTSSFTGEQNAAPNRNSARGFNVIDNIKSAVEKACPGVVSCADILAIAARDSVVALGGPNWNVKVGRRDARTASQAAANSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSRCTNFRARIYNETNINAAFATTRQRTCPRASGSGDGNLAPLDVTTAASFDNNYFKNLM 260          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER1_ARAHY (Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 7.261e-71
Identity = 129/231 (55.84%), Postives = 161/231 (69.70%), Query Frame = 1
Query:  124 NSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNL 816
            ++QLS+N+Y + CP ALS +++ + +A+  E R+GASLLRLHFHDCFV GCD SVLLDDT+NF GEKTA PN NS RGF V+D IK+ +E  CP VVSCADILA+A RDSVV  GG SW V LG               +P P  NLS LIS+FS +G + K +V L+G HT+G+A+CT+FR  IYN+SNID ++A+SLQ  CP  G D  L+  D  TP  FDN YY NL
Sbjct:   21 SAQLSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINL 251          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 265.774 bits (678), Expect = 2.113e-70
Identity = 128/232 (55.17%), Postives = 170/232 (73.28%), Query Frame = 1
Query:  130 QLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRR--GNDNVLANLDRQTPTCFDNLYYKNLL 819
            QL+TN+Y ++CP  LS V++G+ +A+ ++ R+GAS+LRL FHDCFVNGCDGS+LLDDT++F GE+ A PN NSARGF V++ IK+ +EKACP VVSCADILAIA RDSVV  GGP+W V++G               IP P+ +LS LISSFSA GLS ++MVAL+G HT+G++RC +FR  +YN++NI+ +FA   Q+ CPR     D  LA LD  + T FDN Y+KNL+
Sbjct:    1 QLTTNFYSTSCPNLLSTVKSGVKSAVSSQPRMGASILRLFFHDCFVNGCDGSILLDDTSSFTGEQNAGPNRNSARGFTVINDIKSAVEKACPGVVSCADILAIAARDSVVQLGGPNWNVKVGRRDAKTASQAAANSNIPAPSMSLSQLISSFSAVGLSTRDMVALSGAHTIGQSRCVNFRARVYNETNINAAFATLRQRSCPRAAGSGDANLAPLDINSATSFDNSYFKNLM 232          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.369e-69
Identity = 133/257 (51.75%), Postives = 174/257 (67.70%), Query Frame = 1
Query:   55 MAATSYYFLLLILTFVTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCP-RRGN-DNVLANLDRQTPTCFDNLYYKNLL 819
            MA++S+  L +++    A    A++QLS  +Y  +CP+AL+ ++A + AA+  E R+GASLLRLHFHDCFV GCDGSVLL+DTA F GE+TA PN  S RGF VVD IKA +E  CP VVSCADILA+A RDSVV  GGPSW+V LG               +P P+ +L+ L ++F+ + LS  ++VAL+G HT+G A+C +FR HIYND+N++ +FA   +  CP   GN D  LA LD  TPT FDN YY NLL
Sbjct:    1 MASSSFTSLSVMVLLCLAAAAVASAQLSPTFYSRSCPRALATIKAAVTAAVAQEARMGASLLRLHFHDCFVQGCDGSVLLNDTATFTGEQTANPNVGSIRGFGVVDNIKAQVEAVCPGVVSCADILAVAARDSVVALGGPSWRVLLGRRDSTTASLALANSDLPAPSLDLANLTAAFAKKRLSRTDLVALSGAHTIGLAQCKNFRAHIYNDTNVNAAFATLRRANCPAAAGNGDGNLAPLDTATPTAFDNAYYTNLL 257          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER67_ARATH (Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.051e-69
Identity = 130/249 (52.21%), Postives = 171/249 (68.67%), Query Frame = 1
Query:   82 LLILTFVTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLG-XXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRR--GNDNVLANLDRQTPTCFDNLYYKNLL 819
            +++L  +     Q+ +QL+ ++YK +CP    +VR  +  A+  E R+GASLLRL FHDCFVNGCDGS+LLDDT +F+GEKT+ P+NNS RGF V+D+IK  +EK CP +VSCADILAI  RDSV++ GGP W V+LG                IPPP + LS LI+ F AQGLS ++MVAL+G HT+G+A+C +FR  IYN SNIDTSFA S ++ CP      DN  ANLD ++P  FD+ +YK LL
Sbjct:    4 VVLLMMIMMLASQSEAQLNRDFYKESCPSLFLVVRRVVKRAVAREPRMGASLLRLFFHDCFVNGCDGSLLLDDTPSFLGEKTSGPSNNSVRGFEVIDKIKFKVEKMCPGIVSCADILAITARDSVLLLGGPGWSVKLGRRDSTTANFAAANSGVIPPPITTLSNLINRFKAQGLSTRDMVALSGAHTIGRAQCVTFRNRIYNASNIDTSFAISKRRNCPATSGSGDNKKANLDVRSPDRFDHGFYKQLL 252          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER42_MAIZE (Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 7.033e-66
Identity = 126/248 (50.81%), Postives = 171/248 (68.95%), Query Frame = 1
Query:   79 LLLILTFVTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNN-SARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLL 819
            LL+++     +   A++QLS+ +Y ++CP A+S + +G+ +A+  + RVGASLLRLHFHDCF+ GCD S+LL+DT+   GE+T  PN   + R F+VV+ IKA +E ACP VVSCADILA+A RD VV  GGPSW V LG               +PPPTS+L AL++++S + L   +MVAL+G HT+G+A+C+SF GHIYND+NI+ +FA SL+  CP  G  + LA LD  TPT F N YYKNLL
Sbjct:   13 LLVVVVAAALSASTASAQLSSTFYDTSCPSAMSTISSGVNSAVAQQARVGASLLRLHFHDCFIQGCDASILLNDTS---GEQTQPPNLTLNPRAFDVVNSIKAQVEAACPGVVSCADILAVAARDGVVALGGPSWTVLLGRRDSTGSFPSQTSD-LPPPTSSLQALLAAYSKKNLDATDMVALSGAHTIGQAQCSSFNGHIYNDTNINAAFATSLKANCPMSGGSS-LAPLDTMTPTVFGNDYYKNLL 255          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.567e-65
Identity = 126/248 (50.81%), Postives = 161/248 (64.92%), Query Frame = 1
Query:   85 LILTFVTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXI-PPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRR--GNDNVLANLDRQTPTCFDNLYYKNLL 819
            ++L F+     QA +QL T++Y  +CP  L  VR  +   +  E R+ ASLLRL FHDCFVNGCD S+LLDDT +F+GEKTA PNNNS RG+ V+D IK+ +E+ CP VVSCADILAI  RDSV++ GG  W V+LG               + PPPTS L  LI+ F A GLS ++MVAL+G HT+G+ARC +FR  IYN +NID SFA S ++ CP      DN  A LD +TP  FD  Y+  L+
Sbjct:   14 VVLLFIVMLGSQAQAQLRTDFYSDSCPSLLPTVRRVVQREVAKERRIAASLLRLFFHDCFVNGCDASILLDDTRSFLGEKTAGPNNNSVRGYEVIDAIKSRVERLCPGVVSCADILAITARDSVLLMGGRGWSVKLGRRDSITASFSTANSGVLPPPTSTLDNLINLFRANGLSPRDMVALSGAHTIGQARCVTFRSRIYNSTNIDLSFALSRRRSCPAATGSGDNNAAILDLRTPEKFDGSYFMQLV 261          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER66_MAIZE (Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.326e-64
Identity = 125/241 (51.87%), Postives = 167/241 (69.29%), Query Frame = 1
Query:  100 VTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPN-NNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLL 819
            + A    A++QLS+ +Y  +CP ALS +R+G+ +A++ E RVGASLLRLHFHDCFV GCD S+LL+DT+   GE++  PN   + RGF VV+ IKA +E  CP +VSCADILA+A RD VV  GGPSW V LG               +PPPTS+L  L+S+++ + L+  +MVAL+G HT+G+A+C+SF  HIYND+NI+++FA SL+  CPR G+   LA LD  TP  FDN YY NLL
Sbjct:   20 LVALASAASAQLSSTFYDRSCPNALSTIRSGVNSAVRQEPRVGASLLRLHFHDCFVRGCDASLLLNDTS---GEQSQGPNLTLNPRGFVVVNSIKAQVESVCPGIVSCADILAVAARDGVVALGGPSWTVLLG-RRDSTASFAGQTSDLPPPTSSLGQLLSAYNKKNLNPTDMVALSGAHTIGQAQCSSFNDHIYNDTNINSAFAASLRANCPRAGS-TALAPLDTTTPNAFDNAYYTNLL 255          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.859e-64
Identity = 126/257 (49.03%), Postives = 169/257 (65.76%), Query Frame = 1
Query:   55 MAATSYYFLLLILTFVTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPR--RGNDNVLANLDRQTPTCFDNLYYKNLL 819
            MA+ S   L+L++    A+   A++QLS  +Y ++CP ALS +++ + AA+ +E R+GASL+RLHFHDCFV GCD SVLL        E+ A PN  S RGFNVVD IK  +E  C + VSCADILA+A RDSVV  GGPSW V LG               +P P+S+L+ LI +FS +GL + +MVAL+G HT+G+A+C +FR  +YN++NID+SFA +L+  CPR     D+ LA LD  TP  FD+ YY NLL
Sbjct:    1 MASASSVSLMLLVAAAMASA--ASAQLSATFYDTSCPNALSTIKSAVTAAVNSEPRMGASLVRLHFHDCFVQGCDASVLLSGQ-----EQNAGPNAGSLRGFNVVDNIKTQVEAICSQTVSCADILAVAARDSVVALGGPSWTVLLGRRDSTTANESQANTDLPAPSSSLAELIGNFSRKGLDVTDMVALSGAHTIGQAQCQNFRDRLYNETNIDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLL 250          
The following BLAST results are available for this feature:
BLAST of CK938373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
PER4_VITVI2.037e-8157.20Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]
PER52_ARATH2.412e-7454.90Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=... [more]
PER1_ARAHY7.261e-7155.84Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 ... [more]
PERP7_BRARA2.113e-7055.17Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]
PER70_MAIZE1.369e-6951.75Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER67_ARATH3.051e-6952.21Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=... [more]
PER42_MAIZE7.033e-6650.81Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1[more]
PER68_ARATH1.567e-6550.81Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PER66_MAIZE1.326e-6451.87Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1[more]
PER2_ORYSJ3.859e-6449.03Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004443_F11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938373 ID=CK938373; Name=CK938373; organism=Citrus sinensis; type=EST; length=820bp
GGGACGTATTTATAAAGGCAAAAATCTCTCTTGACGACTGCAGAAGTGCT
AGATATGGCAGCAACAAGTTACTACTTTCTCCTTCTTATACTTACTTTTG
TCACTGCAACTCTTGATCAAGCCAACTCCCAACTCTCAACAAACTACTAC
AAATCCACATGCCCAAAAGCATTGTCTATTGTTCGGGCAGGGATTATAGC
TGCTATAAAAAATGAAACACGCGTAGGGGCGTCTTTACTTCGACTTCATT
TCCACGACTGCTTTGTCAATGGCTGCGATGGATCGGTACTGTTGGATGAT
ACGGCCAATTTCATAGGAGAGAAAACAGCAGTTCCTAACAATAACTCGGC
CAGAGGGTTCAACGTGGTGGATCAGATTAAAGCTAATCTGGAGAAAGCAT
GCCCCCGTGTTGTTTCGTGTGCAGATATTCTTGCCATTGCCACACGCGAT
TCAGTTGTTGTTTTCGGAGGTCCTTCATGGAAAGTTAGATTGGGAAGAAG
AGATTCTACCACTGCTAGCAGGGCAGCGGCAAATACCTCCATCCCTCCAC
CCACTTCTAATTTGAGTGCTCTCATATCAAGCTTCTCGGCACAGGGTCTC
TCATTAAAGAACATGGTGGCTCTTGCTGGTGGACATACGGTAGGCAAGGC
AAGGTGCACATCATTTCGAGGACACATTTACAACGATTCCAATATTGACA
CCAGCTTCGCCAGGTCCTTGCAGCAGAGATGCCCAAGAAGAGGAAATGAC
AATGTTCTGGCAAACCTTGACCGTCAAACTCCAACGTGCTTTGACAATTT
ATATTACAAGAATCTGTTGA
back to top