CK938368

Overview
NameCK938368
Unique NameCK938368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938368_ssr49 microsatellite CK938368_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10573 contig Csv1_Contig10573:1..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.458e-36
Identity = 83/193 (43.01%), Postives = 124/193 (64.25%), Query Frame = 1
Query:   91 KYFLILLAIFSYLNSSSAARHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLI---KASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKV---VRAQIVKIAHMTSNALALINSYAS 651
            K  L+  A+   L ++SAA           +FIKTSC+ TTYP +C +SL+ +A  IQ +P+ LA  +L V+L   +     M +++K  G+K R+  A+ DCLEE+ DS+D + +S  EM  +   K ++F   MS+++TWVSAALTDETTC DGF    ++GK+   VRAQ+V +A +TSNALAL+N++A+
Sbjct:    5 KSTLVFSALLVILAAASAA--------PANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAA 189          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.810e-21
Identity = 64/190 (33.68%), Postives = 106/190 (55.79%), Query Frame = 1
Query:  100 LILLAIFSYLNSSSAARHGPSKI----AADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKM-SKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLI-KASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQI---VKIAHMTSNALALINS 642
            L+LLA    + +++  ++   KI    +     +K+ CSST YP LC+ ++A       TS K +  ASLN+T    K     + K+ +K  G+ PREV A+ DCLE + +++DEL  +V ++    K  +      D++T +S+A+T++ TC DGF  +  + KV +A +   V + HM SNALA+I +
Sbjct:   29 LLLLASIVGIAATTTNQNKNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKN 218          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.091e-19
Identity = 56/186 (30.11%), Postives = 100/186 (53.76%), Query Frame = 1
Query:  100 LILLAIFSYLNSSSAARHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKM-SKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLIKA-SNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQI---VKIAHMTSNALALINS 642
            L + A+      +S A    +   +    +++SCSST YP LC  ++     +  TS K +  AS+N+T+   +     + K+  K  G+ PRE  A+ DCLE + +++DEL ++V ++ L            D++T +S+A+T++ TC DGF  +  + +V +A +   + + HM SNALA+I +
Sbjct:   30 LFVAAVAGISAGASKANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKN 215          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 68/219 (31.05%), Postives = 107/219 (48.86%), Query Frame = 1
Query:   40 SKVRERDMEGSSSNHMLKYFLILLAIFSYL-----------NSSSAARHGPSKIAADRRFIKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEM-GLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQI----VKIAHMTSNALALINS 642
            +K+ E     + SN   K   + LA+F+ L             +S    G +        +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K+V ++       +      D++T +SAA+T++ TC DGF  +  N K VR  +    V +  M SNALA+I +
Sbjct:    9 TKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDAN-KHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 68/219 (31.05%), Postives = 107/219 (48.86%), Query Frame = 1
Query:   40 SKVRERDMEGSSSNHMLKYFLILLAIFSYL-----------NSSSAARHGPSKIAADRRFIKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEM-GLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQI----VKIAHMTSNALALINS 642
            +K+ E     + SN   K   + LA+F+ L             +S    G +        +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K+V ++       +      D++T +SAA+T++ TC DGF  +  N K VR  +    V +  M SNALA+I +
Sbjct:    9 TKLSESSSNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDAN-KHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 52/157 (33.12%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  187 IKTSCSSTTYPTLCYKSLARHASLIQ--TSPKLLAHASLNVTL-AMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLI-KASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKIAH---MTSNALALI 636
            +K++CS+T +P LCY ++   +   +  TS K +   SLN+T+ A+ ++  AV   +    G+ PRE  A+ DCLE + +++DEL  +V ++ L     + +  + D++T +S+A+T++ TC DGF  +  + KV +  +    H   M SNALA+I
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMI 222          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 53/185 (28.65%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  100 LILLAIFSYLNSSSAARHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL---AMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIV----KIAHMTSNALAL 633
            ++   IF+ + +  + +  P       + I  +CS + YP LC  +L      +      L H S N TL   + A  TS+ +        M PR   A   CLE L DSVD L +++  + ++       + SD+ TW+S+A+T+  TC+DGF++    G  V+ Q++     ++ M SN LA+
Sbjct:   46 VVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQ----MPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE---SHSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAI 223          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 53/211 (25.12%), Postives = 97/211 (45.97%), Query Frame = 1
Query:   40 SKVRERDMEGSSSNHMLKYFLILLAIFSYLNSSSAARHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKST---SAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVN-GKVVRAQIVKIAHMTSNALALINSYASLRG 660
            +K ++R +  S S+ +L   ++ + I   +N S  A  G  +I    + IK  C+ T Y   C  +L + A    + P  L   + N T+         S  M+++ K P  K     A+  C E +  ++ EL KS  E+G  +    +  +  ++ W+SA ++ E TC DGF+    N G+ ++  +     +T N LA++   ++  G
Sbjct:   10 AKRKKRYVIISISSVLLISMVVAVTIGVSVNKSDNA--GDEEITTSVKAIKDVCAPTDYKETCEDTLRKDAK-DTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKDPRAKM----ALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVTEMSNYLG 213          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 51/211 (24.17%), Postives = 100/211 (47.39%), Query Frame = 1
Query:   40 SKVRERDMEGSSSNHMLKYFLILLAIFSYLNSSSAARHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAM---AKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVN-GKVVRAQIVKIAHMTSNALALINSYASLRG 660
            SK + R +  + S+ +L   ++ + +   LN       G +++ A  + +K  C+ T Y   C  +L ++     T P  L   + NVT+     A   S  ++++ K      R   A+  C E +  ++DEL  S  E+G  +    +  + +++ W+SAA++ E TC +GF+    N G+ ++  +     +T N LA+I+  ++  G
Sbjct:    9 SKRKRRYIVITISSVLLISMVVAVTVGVSLNKHDGDSKGKAEVNASVKAVKDVCAPTDYRKTCEDTLIKNGKNT-TDPMELVKTAFNVTMKQITDAAKKSQTIMELQKDS----RTRMALDQCKELMDYALDELSNSFEELGKFEFHLLDEALINLRIWLSAAISHEETCLEGFQGTQGNAGETMKKALKTAIELTHNGLAIISEMSNFVG 214          
BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 56/190 (29.47%), Postives = 88/190 (46.32%), Query Frame = 1
Query:  100 LILLAIFSYLNSSSAARHG-PSKIAADRRFIKTSCSSTTYPTLCYKSLARH-ASLIQTSPKLLAHASLNVTL-----AMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNG--KVVRAQIVKIAHMTSNALALINS 642
            ++  AIF+ + S        P       + I  +C  T +P LC  SL     SL  +S K L H ++N+TL     A+  S S   + M       PR   A   C+E L DSVD L +++  +    A        D+ TW+SAALT+  TC++GF+     G    + A +  ++ + SN LA+ ++
Sbjct:   57 ILAAAIFAGVRSRLKLNQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLSFVDMP------PRARSAYDSCVELLDDSVDALSRALSSVVSSSAKP-----QDVTTWLSAALTNHDTCTEGFDGVDDGGVKDHMTAALQNLSELVSNCLAIFSA 235          
The following BLAST results are available for this feature:
BLAST of CK938368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
21KD_DAUCA2.458e-3643.0121 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH3.810e-2133.68Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH2.091e-1930.11Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI3.338e-1731.05Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI3.338e-1731.05Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC1.657e-1633.12Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME61_ARATH1.831e-1528.65Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME28_ARATH7.202e-1225.12Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME21_ARATH9.406e-1224.17Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME34_ARATH2.737e-1129.47Probable pectinesterase/pectinesterase inhibitor 3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_F06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938368 ID=CK938368; Name=CK938368; organism=Citrus sinensis; type=EST; length=792bp
GGGGACATAACTCAATCCTCACTTCATTTGCTCATAATTTCAAAGGTCAG
AGAGAGAGACATGGAAGGTTCATCCTCAAATCATATGCTTAAATACTTTC
TCATTTTACTAGCCATTTTTTCCTACTTAAATTCAAGCTCAGCCGCTAGA
CATGGCCCCTCTAAAATTGCTGCTGACAGAAGGTTCATCAAAACATCTTG
CAGTTCAACAACTTATCCAACACTTTGCTATAAATCCCTTGCTAGACATG
CAAGCTTAATCCAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTCAAC
GTGACCCTTGCAATGGCTAAATCAACGTCAGCCGTCATGTTAAAGATGTC
GAAAAGCCCTGGAATGAAGCCTAGAGAGGTGGATGCCATGCAAGATTGTT
TGGAGGAGCTGAGTGATTCAGTTGATGAGCTCAGAAAGTCCGTTGGCGAA
ATGGGTCTGATCAAAGCTTCAAATTTTGAACTTACAATGAGTGATATACA
GACTTGGGTTAGTGCTGCTTTGACTGATGAGACTACTTGCAGCGATGGAT
TTGAGAAGAATACGGTGAATGGGAAAGTTGTGAGGGCCCAGATTGTGAAG
ATTGCTCATATGACTAGCAATGCCTTGGCTTTGATCAATAGTTATGCTTC
TCTTCGCGGTTAGATATTCTCATGATTAGCTCCATTATTGTAAGTGATTT
ATGCAGTATTAATCCTGCCTGTGGAGATCAGATTTATGAAAATGTAATCT
TTATTGCAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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