EL492704

Overview
NameEL492704
Unique NameEL492704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11826 contig Csv1_Contig11826:689..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.000e-19
Identity = 33/62 (53.23%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 186
            A+PT++IT+ H+ S   CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  210 ALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.000e-19
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 186
            A+PTV +T+ H+ S   CPVC+D + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  212 ALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.613e-19
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 186
            A+PTV +T+ H+ S   CPVC+D + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  215 ALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 186
            A+PTV +T+ H+ S   CPVC++ + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  214 ALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.820e-19
Identity = 33/62 (53.23%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 186
            A+PT++IT+ H+ S   CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  211 ALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.928e-19
Identity = 32/62 (51.61%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 186
            A+PT++IT+ H+     CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  211 ALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.612e-16
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 186
            ++PTV +TQ  + +   CPVC++ + +  + RQ+PCNH +HS CIVPWL  H++CPVCR+ L
Sbjct:  212 SLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.612e-16
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 186
            ++PTV +TQ  +     CPVC++ + +  E RQ+PCNH +HS CIVPWL  H++CPVCR+ L
Sbjct:  211 SLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.484e-14
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 189
            ++P V +T     +   CPVC  +FE G   RQ+PC H++HS CI+PWL + NSCP+CR ELP
Sbjct:   62 SLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124          
BLAST of EL492704 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.531e-14
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 AMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 189
            ++P V +T     +   CPVC  +FE G   RQ+PC H++HS CI+PWL + NSCP+CR ELP
Sbjct:   62 SLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124          
The following BLAST results are available for this feature:
BLAST of EL492704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RN126_XENTR2.000e-1953.23RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_HUMAN2.000e-1958.06RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN2.613e-1958.06RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN126_MOUSE4.457e-1956.45RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126A_XENLA5.820e-1953.23RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA9.928e-1951.61RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN115_MOUSE4.612e-1648.39RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
RN115_HUMAN4.612e-1650.00RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN181_XENTR1.484e-1449.21E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN181_XENLA2.531e-1449.21E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionC5770 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5770, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492704 ID=EL492704; Name=EL492704; organism=Citrus sinensis; type=EST; length=425bp
GCTATGCCCACCGTTAGGATCACACAGAGGCATCTCCGTTCTGATTCACA
CTGTCCAGTTTGCCAAGATAAATTCGAGCTGGGGTCTGAAGCTAGACAAA
TGCCATGTAACCATATATACCACTCAGATTGTATTGTGCCATGGCTAGTG
CAGCACAACTCATGTCCTGTATGTCGCCAAGAATTACCACTGCAAGGGTC
AAGTAGCAGTCGTATTCATCAAAGCTCAAGTGGTCAAAGTCGAAGCACCA
CTTTTGGTAGTAATGGCANCGGAAGGGAGAATCAAGGAAGACGGAATTTG
TTCTCTGGTTTCTGGCCGTTCCGATCTTCGAATTCAAGCTCTAATCACAA
TGGAACAACTGAAAGCAGTTCACCAGCAATGCACGAGAATAACCCTCACA
TGGGGTATTCCGGATGGCCATTTGT
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