CK937764

Overview
NameCK937764
Unique NameCK937764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937764 vs. ExPASy Swiss-Prot
Match: SERB_ARATH (Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  118 MEGLVRSQISPIGAHYKQQHSVFIPKFSLKLRTNLCRGRVGMMKHSKSFNSVAASVQPLEASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARLFG 483
            ME L  S++ P+    ++  S+F     L+LR   CRG V +M H K    V ASVQP E S LG   N +PSKE+L LWR+ +AVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTAR  G
Sbjct:    1 MEALTTSRVVPVQVPCRKLSSLFANFSCLELRRYPCRGLVSIMNHPKLLRPVTASVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMG 122          

HSP 2 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 2
Query:  521 LDGLTEF------IFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANN 718
            +D L EF      +  + ARAMGGSVPFEEALAARLSLFKPSLS+V+++L+KRPPRLSPGI+ELVKKL+ANN
Sbjct:  100 IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANN 171          
BLAST of CK937764 vs. ExPASy Swiss-Prot
Match: SERB_RAT (Phosphoserine phosphatase OS=Rattus norvegicus GN=Psph PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.143e-22
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 2
Query:  560 RAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANN 718
            RAMGG++PF++AL  RL+L +PS  QVQ  L + PP L+PGI ELV +L+  N
Sbjct:   50 RAMGGALPFKDALTERLALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERN 102          

HSP 2 Score: 61.6178 bits (148), Expect = 4.143e-22
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  340 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARLFG 483
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+FCG   AV+E T R  G
Sbjct:    6 ELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMG 53          
BLAST of CK937764 vs. ExPASy Swiss-Prot
Match: SERB_MOUSE (Phosphoserine phosphatase OS=Mus musculus GN=Psph PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.143e-22
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 2
Query:  560 RAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANN 718
            RAMGG++PF++AL  RL+L +PS  QVQ  L + PP L+PGI ELV +L+  N
Sbjct:   50 RAMGGALPFKDALTQRLALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERN 102          

HSP 2 Score: 61.6178 bits (148), Expect = 4.143e-22
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  340 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARLFG 483
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+FCG   AV+E T R  G
Sbjct:    6 ELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMG 53          
BLAST of CK937764 vs. ExPASy Swiss-Prot
Match: SERB_DROME (Phosphoserine phosphatase OS=Drosophila melanogaster GN=aay PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.612e-16
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  563 AMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNK 721
            AMGG++ F++AL  RL++ +P+  QV+DF+++RP  LS  +   V  LKA  K
Sbjct:   98 AMGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAEGK 150          

HSP 2 Score: 52.373 bits (124), Expect = 1.612e-16
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query:  298 ASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARLFG 483
            ASA+   +    + +V+Q    +  VCFDVDSTV  +EGIDELAE+CG G  VA  T    G
Sbjct:   42 ASAITPPKQPQLAAKVIQ---QSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMG 100          
The following BLAST results are available for this feature:
BLAST of CK937764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SERB_ARATH9.774e-3459.02Phosphoserine phosphatase, chloroplastic OS=Arabid... [more]
SERB_RAT4.143e-2254.72Phosphoserine phosphatase OS=Rattus norvegicus GN=... [more]
SERB_MOUSE4.143e-2254.72Phosphoserine phosphatase OS=Mus musculus GN=Psph ... [more]
SERB_DROME1.612e-1643.40Phosphoserine phosphatase OS=Drosophila melanogast... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004482_C02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937764 ID=CK937764; Name=CK937764; organism=Citrus sinensis; type=EST; length=723bp
GGGGGGGAAAAAGACACTGAANNNAGTGGGCAGACACTGAACAGATCCCA
TCAGCACCCAACAACAGTGCGATCCAAAAGCTTTAATTAACTTTCAAAAA
TTAACGTTATTAATCTGATGGAGGGGTTGGTGAGATCACAAATCTCTCCA
ATTGGTGCTCATTACAAACAACAACACTCTGTTTTTATTCCGAAATTTTC
ATTGAAATTGAGGACAAATTTATGTAGAGGTCGAGTTGGGATGATGAAGC
ATTCTAAATCATTCAATTCCGTTGCTGCTTCAGTGCAACCATTAGAAGCC
TCGGCATTGGGCCGTTCTGAGAACACACTGCCCTCCAAAGAGGTTCTTCA
GCTGTGGAGAACTGCTGATGCGGTGTGCTTCGATGTTGATAGCACGGTAT
GTGTAGATGAGGGCATTGATGAACTTGCGGAATTTTGTGGAGCTGGAAAG
GCTGTTGCGGAATGGACTGCCAGGTTGTTTGGCCTCTTTGTTCATTGAAA
ATAATTCATGTTTGATTTTCTTGGATGGTCTTACAGAATTCATTTTTGTG
TTTTTTGCCAGGGCAATGGGGGGGTCTGTTCCGTTCGAGGAGGCCTTGGC
TGCCAGACTTTCCTTGTTCAAACCTTCATTGTCCCAAGTCCAGGATTTTC
TTGAGAAGAGACCCCCTAGGCTCTCACCTGGCATAGATGAGTTGGTCAAG
AAGCTGAAGGCTAACAATAAGAA
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