CK937761

Overview
NameCK937761
Unique NameCK937761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.940e-77
Identity = 153/203 (75.37%), Postives = 156/203 (76.85%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSW-VRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALT      +  Q H  V                                    DVVSIPKTNENFRLLYDTKGRFRLHSIRDEE+KFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKIT+FIKFDVGNVVM
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIHFCIRL-------------------------SDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVM 178          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.098e-75
Identity = 146/203 (71.92%), Postives = 154/203 (75.86%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSW-VRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALT      +  Q H  V                                    DV+SIPKTNEN+RLLYDTKGRFRLH IRDE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIK+DLETNKI +FIKFDVGNVVM
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTY---------------------PAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 4.046e-75
Identity = 147/203 (72.41%), Postives = 153/203 (75.37%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSW-VRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALT      +  Q H  V                                    DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVM
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTY---------------------PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.284e-75
Identity = 144/202 (71.29%), Postives = 152/202 (75.25%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALT                          I                       DVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI +FIKFDVGNVVM
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTY--------------------REVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 280.796 bits (717), Expect = 5.284e-75
Identity = 147/203 (72.41%), Postives = 153/203 (75.37%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSW-VRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALT      +  Q H  V                                    DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVM
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTY---------------------PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.284e-75
Identity = 147/203 (72.41%), Postives = 153/203 (75.37%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSW-VRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALT      +  Q H  V                                    DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVM
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTY---------------------PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.700e-73
Identity = 142/203 (69.95%), Postives = 153/203 (75.37%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSW-VRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALT      +  Q H  V                                    DV+SIPKT EN+RLLYDTKGRFRL S++DE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKANDTIK+DLETNKI +FIKFDVGNVVM
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTY---------------------PAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.187e-72
Identity = 143/203 (70.44%), Postives = 151/203 (74.38%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSW-VRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALT      +  Q H  V                                    DVVSIPKTNE+FRLLYDTKGRF LH+I  +E KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI +FIKFDVGNVVM
Sbjct:    1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTY---------------------PAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.708e-57
Identity = 115/202 (56.93%), Postives = 136/202 (67.33%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  G  V+                  +I                       DV+SI KT ENFRL+YD KGRF +H I +EEAK+KLCKV+ +  G KGIP++ T+D RTIRYPDP+IKANDT+++DLET KITEFIKFD GN+ M
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALT--GDEVK------------------KICMQRFIKVDGKVRTDITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.708e-57
Identity = 117/202 (57.92%), Postives = 135/202 (66.83%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  G  V+                  +I                       DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ M
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALT--GDEVK------------------KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCM 182          
The following BLAST results are available for this feature:
BLAST of CK937761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS4_PRUAR1.940e-7775.3740S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_MAIZE3.098e-7571.9240S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS43_ARATH4.046e-7572.4140S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS4_SOLTU5.284e-7571.2940S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS42_ARATH5.284e-7572.4140S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH5.284e-7572.4140S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_ORYSJ1.700e-7369.9540S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_GOSHI4.187e-7270.4440S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_ICTPU1.708e-5756.9340S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_CRIGR1.708e-5757.9240S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_B10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937761 ID=CK937761; Name=CK937761; organism=Citrus sinensis; type=EST; length=739bp
GGGGGCGGGAGTGCATTTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGT
TTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCT
CACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTA
ATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCC
AAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCT
TATCTTACGCAACCGCTTGAAGTATGCTCTTACCCTGCTGGGTTCATGGG
TGCGGGCTCAAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGAT
ATCATATTCCAAATTTAAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTT
TTTTAAGATTTTTCACTTGTCCTTTTGACTATCAGATGTTGTGTCAATTC
CAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTC
CGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGT
TCGATCAGTGCAATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATG
ATGGGAGGACTATTCGCTACCCAGACCCACTCATCAAGGCCAATGATACC
ATCAAGCTGGACCTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGA
TGTTGGAAATGTTGTGATGGGTGACTGGAGGGAGAAACA
back to top