CK937753

Overview
NameCK937753
Unique NameCK937753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937753 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   48 EPW--LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVPFPAIPLAIIGQCFGF 293
            EPW  + ENG+  V +K    E+RHGRTAHNMSSSSLRKKSDL LV K+    L+  L+N+QEVILGTKL++ F AIPLAI+   + +
Sbjct:    6 EPWAAIAENGNANVTAKGSSRELRHGRTAHNMSSSSLRKKSDLRLVQKVPCKTLKNILSNLQEVILGTKLTLLFLAIPLAILANSYNY 93          
BLAST of CK937753 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.855e-18
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 3
Query:   45 TEPW-LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVPFPAIPLAII 275
            TEPW + ENG+  + +K    E+R GRTAHNMSSSSLRKKSDL ++ K+ +  L+  L+N+QEVILGTKL++ FPAIP AII
Sbjct:    6 TEPWSVAENGNPSITAKGSSRELRLGRTAHNMSSSSLRKKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAII 87          
BLAST of CK937753 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.559e-16
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  102 HGR--TAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVPFPAIPLAIIGQCFGFAEV 302
            HGR  TAHNMSSSSLRKKSD  LV K+    LR  LAN+QEV L TKL+V FPA+PLAI  QCF F +V
Sbjct:   19 HGRSRTAHNMSSSSLRKKSDAALVRKVPVAPLRPLLANLQEVFLATKLAVLFPAVPLAIAAQCFRFDQV 87          
The following BLAST results are available for this feature:
BLAST of CK937753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CAX3_ARATH2.583e-1957.95Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1_ARATH2.855e-1859.76Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX1A_ORYSJ4.559e-1666.67Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004482_D04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937753 ID=CK937753; Name=CK937753; organism=Citrus sinensis; type=EST; length=662bp
TTTTTTTTTTTTCTTTCAATTGCATTTGTGAAAAAATGGCTTCGACTGAA
CCATGGCTGATGGAGAATGGCAGCGTGAAGGTTTTGAGCAAGGAGATCAG
ACATGGAAGAACTGCACACAACATGTCATCCTCCTCGTTGAGGAAAAAAT
CCGATCTTACCCTTGTCTCGAAAATTCGATTCCCTTGTCTTAGACGGTGT
CTGGCTAATATCCAGGAGGTCATTTTGGGGACTAAACTTTCAGTTCCCTT
TCCCGCCATTCCTTTAGCCATAATCGGCCAGTGTTTTGGATTTGCAGAAG
TAAGTGCTTCTTGCTTAATAACTTAGTTAATTAATATGTAAGGAAAAAAA
TAAGGAGAAAATAATAAACCTGCGAATCATTTATAAATATTAAAGCTTCT
TGTTTCATAACATTTTATTGTTATTATTTTTTGAATCATTTATTCATTCA
ATACATGATGCAGCCATGGGTATTCGCTCTGAGCTTACTAGGACTGACTC
CTCTGGCTGAACGTGTCAGCTTCTTGACAGAGTAAGCCTGTTCTTTAAAT
TTTTTATGTAATGTGTTGATTAATCGTTGGATTATGGTATCCTGATGATT
TATTATCACCGCTCGTTACTGACTAAAGTTTTCATTCAAATCTTCTTGTT
GTTCGTTCTCAA
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