CK937748

Overview
NameCK937748
Unique NameCK937748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937748 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.672e-18
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = -2
Query:   94 YLSGARVRIECKDRNSLNLKYSVDGETDSTGTYNIHVDGDHQDQICYVKLIGSPLPRCKTADPGRARSQVILTRSNGAVSNLHFANALGFLKNRPLAFCPELLKK 408
            Y++GA+VR+ECK   +  L+ ++DG TD+TGTY I +   H++ IC V L+ SP   C      R R+ V+LTR+ G   +L  AN LG+ K+ PL  C  LLK+
Sbjct:   57 YIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQ 161          
BLAST of CK937748 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.672e-18
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = -2
Query:   94 YLSGARVRIECKDRNSLNLKYSVDGETDSTGTYNIHVDGDHQDQICYVKLIGSPLPRCK--TADPGRARS-QVILTRSNGAVSNLHFANALGFLKNRPLAFCPELLKK 408
            Y+ GA+V +EC++R    L YS D ETD +GTY I VDGDH+++IC + L  S  P C   + DP   +S ++ LT++NG  + +  AN LGF+K +PL  C + L++
Sbjct:   49 YMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALRE 156          
BLAST of CK937748 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = -2
Query:   94 LSGARVRIECKDRNSLNLKYSVDGETDSTGTYNIHVDGDHQDQICYVKLIGSPLPRCKTADP---GRARSQVILTRSNGAVSNLHFANALGFLKNRPLAFCPELLKK 405
            + GA V++EC++  +    +  +  TD  G Y+I V+GD +D IC ++L+ SP   C         +  ++V LT +NG  S++  ANALGF++  PL  CPE+LK+
Sbjct:   53 MEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKE 159          
BLAST of CK937748 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = -2
Query:   91 LSGARVRIECKDRNSLNLKYSVDGETDSTGTYNIHVDGDHQDQICYVKLIGSPLPRCKTADPGRARSQVILTRSNG-AVSNLHFANALGFLKNRPLAFCPELLKKY 405
            + GA V ++C+  N    K   +  TD  G Y I +D DHQ++IC V L  SP   C   +  R R++V LT +NG     + +AN + F +  PL  C  +L+ Y
Sbjct:   29 VQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CK937748 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  100 LSGARVRIECKDRNSLNLKYSVDGETDSTGTYNIHVDGDHQDQICYVKLIGSPLPRCKTADPGRARSQVILTRSNGAVSNLHFANALGFLKNRPLAFCPELL 405
            L GA V+++C++ ++    +SV+G TD  G Y + V+GDH++ IC V ++ SP   CK +  G  ++++  + + G  + + FAN L F+K   +  C E L
Sbjct:   50 LEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CK937748 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = -2
Query:   91 LSGARVRIECKDRNSLNLKYSVDGETDSTGTYNIHVDGDHQDQICYVKLIGSPLPRCKTADPGRARSQVILTRSNG-AVSNLHFANALGFLKNRPLAFCPELLKKY 405
            + GA V ++C+  +    K   +  TD  G Y I +D DHQ++IC V L  SP   C   +  R R++V LT + G     + +AN + F +  PL  C  +L+ Y
Sbjct:   29 VEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
The following BLAST results are available for this feature:
BLAST of CK937748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSC13_MAIZE3.672e-1842.86Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE3.672e-1842.59Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
CHE1_CHEAL2.228e-1536.45Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
PHLB_PHLPR2.305e-1234.91Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LAT52_SOLLC1.494e-1133.33Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
LOLB_LOLPR5.678e-1133.02Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004482_C10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937748 ID=CK937748; Name=CK937748; organism=Citrus sinensis; type=EST; length=574bp
GGGGGAACCCAAGCCAATCAAANNNCATCAATCTTCTGCTCCATCANNNN
CTGAATTATTCTAAATAAATTTTATCTCATTTTCAGGCAAGTACTTCTTA
AGCAACTCAGGGCAGAAAGCCAGCGGCCGGTTCTTCAAGAAACCCAAGGC
GTTGGCGAAATGAAGATTTGAAACGGCGCCATTGGAACGTGTGAGGATGA
CTTGTGAACGTGCACGCCCCGGATCAGCTGTTTTGCAGCGGGGCAACGGG
CTGCCGATGAGCTTCACGTAGCAAATTTGATCCTGGTGGTCACCATCTAC
GTGAATGTTGTATGTTCCTGTTGAGTCTGTCTCGCCGTCGACGGAGTATT
TCAGATTTAAGCTGTTCCTATCTTTGCATTCGATTCTCACACGAGCACCT
GAGAGATACATAATATGTACGTGCAATATGGTTAGGGTTGAGTATATATA
TTATGGTGGCTTCTAAGAGCATAATTGAAATGTTTATGTTTTAATTTGTA
AAGTTACATTTTCGATATTAATTAAACTGGTCAAATTAAGTATTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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