CK937747

Overview
NameCK937747
Unique NameCK937747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937747_ssr130 microsatellite CK937747_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2117 contig Csv1_Contig2117:5..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.491e-66
Identity = 119/126 (94.44%), Postives = 122/126 (96.83%), Query Frame = 2 
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            PKKRTF+KFS+RGVDLD LLDM  DELVKLF ARARRRFQRGLKRKPMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG
Sbjct:   15 PKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 140

HSP 2 Score: 29.6462 bits (65), Expect = 2.491e-66
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  141 IGATHSSRFIPLK 153
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 5.527e-66
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 2 
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRFQRGLKR+PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG
Sbjct:   13 PKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 138

HSP 2 Score: 29.6462 bits (65), Expect = 5.527e-66
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  139 IGATHSSRFIPLK 151
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 4.621e-65
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = 2 
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG
Sbjct:   13 VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 139

HSP 2 Score: 30.0314 bits (66), Expect = 4.621e-65
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            VGATHSSRFIPLK
Sbjct:  140 VGATHSSRFIPLK 152
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 4.621e-65
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = 2 
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG
Sbjct:   13 VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 139

HSP 2 Score: 30.0314 bits (66), Expect = 4.621e-65
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            VGATHSSRFIPLK
Sbjct:  140 VGATHSSRFIPLK 152
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 7.854e-65
Identity = 115/126 (91.27%), Postives = 123/126 (97.62%), Query Frame = 2 
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            PKKRTF+K+S+RGVDLDALLDMS D+LV+LF ARARRRFQRGLKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG
Sbjct:   16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 141

HSP 2 Score: 29.6462 bits (65), Expect = 7.854e-65
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  142 IGATHSSRFIPLK 154
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 8.497e-61
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 2 
Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTFKKFSFRGVDLDALLDMS D+LVKLF +R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG
Sbjct:   13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 137

HSP 2 Score: 27.335 bits (59), Expect = 8.497e-61
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            VGAT+SSRFIPLK
Sbjct:  138 VGATNSSRFIPLK 150
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.177e-60
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 2 
Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTFKKFSFRGVDLDALLDMS ++LVK FS+R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG
Sbjct:   12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 136

HSP 2 Score: 27.335 bits (59), Expect = 4.177e-60
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            VGAT+SSRFIPLK
Sbjct:  137 VGATNSSRFIPLK 149
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS152_ARATH (40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.912e-58
Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = 2 
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            L KKRTFKKFSF+GVDLDALLDM  D+LV+LF +R RRR  RGL RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKPV+HG+PG
Sbjct:   13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPG 139

HSP 2 Score: 28.4906 bits (62), Expect = 2.912e-58
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3 
Query:  528 GATHSSRFIPLK 563
            GATHSSRFIPLK
Sbjct:  141 GATHSSRFIPLK 152
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 8.316e-55
Identity = 96/127 (75.59%), Postives = 114/127 (89.76%), Query Frame = 2 
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            L KKRTF+KFS+RGVDLDALLD+++DEL  +  ARARR+  RGLKR+PM LIKKLRKAK+EA P EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYL EFSISYKPVKHGRPG
Sbjct:   13 LKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPG 139

HSP 2 Score: 29.6462 bits (65), Expect = 8.316e-55
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  140 IGATHSSRFIPLK 152
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.845e-54
Identity = 95/125 (76.00%), Postives = 115/125 (92.00%), Query Frame = 2 
Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 1.845e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145
The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_ELAOL2.491e-6694.4440S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS15_PICMA5.527e-6694.4440S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS154_ARATH4.621e-6592.1340S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS151_ARATH4.621e-6592.1340S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS15_ORYSJ7.854e-6591.2740S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS153_ARATH8.497e-6190.4040S ribosomal protein S15-3 OS=Arabidopsis thalian... [more]
RS155_ARATH4.177e-6090.4040S ribosomal protein S15-5 OS=Arabidopsis thalian... [more]
RS152_ARATH2.912e-5882.6840S ribosomal protein S15-2 OS=Arabidopsis thalian... [more]
RS15_PODAN8.316e-5575.5940S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_RAT1.845e-5476.0040S ribosomal protein S15 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_C09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bp
GGGGCTTCTCCTCACATTAAAAAACCCTAGCGGCATCAGATCCAGCGGGA
NNNTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCTAACC
ATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGACTGCC
GAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTGGACG
CTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGCACGT
GCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCTTTGAT
CAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAGCCTG
AACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAATGATT
GGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAAT
CAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCATACA
AGCCTGTGAAGCACGGTAGACCTGGTTGGTGCTACCCATTCCTCAAGGTT
CATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAGCTTATT
GTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTTACATTT
TTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTAGATAAT
GGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATATG
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