CK937746

Overview
NameCK937746
Unique NameCK937746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2750 contig Csv1_Contig2750:14..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            MSD DIQ+           A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKN S FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            MSD DIQ+           A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKN S FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            MSD DIQ+           A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKN S FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.980e-46
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            MS+FD  +           AEDSGAG+K+YVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKN S+FLVQAGIVKKE+IK+HGF
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.980e-46
Identity = 92/115 (80.00%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            MSD DIQ+           A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKN S FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.980e-46
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            MSD ++QV           AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKN STFLVQAG+VKK++IK+HGF
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.968e-45
Identity = 90/113 (79.65%), Postives = 97/113 (85.84%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            MS+ D QV           AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKN STFLVQAG+VKK++IK+HGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.473e-44
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            MS+ D QV           AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKN STFLVQAG+VKK+ I++HGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.514e-38
Identity = 78/113 (69.03%), Postives = 88/113 (77.88%), Query Frame = 2
Query:  155 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            M D DIQ+          +  D+   +KEYVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CCNGTVV D ELG+VIQLQGDQRKN STF+VQAGIVKK+ IK+H F
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 2
Query:  227 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CK937746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SPOST1.574e-4680.87Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ1.574e-4680.87Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI1.574e-4680.87Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_SALBA5.980e-4678.76Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_MAIZE5.980e-4680.00Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI12_ARATH5.980e-4679.65Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH2.968e-4579.65Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL1.473e-4478.76Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR3.514e-3869.03Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG2.524e-2860.67Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937746 ID=CK937746; Name=CK937746; organism=Citrus sinensis; type=EST; length=600bp
GGGGGTCACCAAGAACGAGCTTCAGACTTATACGAATCCGATTTAGGGTT
TCTTTTTGATCTTATCAGATCGGACTATCTCGATTATTAAACCCTAATCT
ACGGATCAGGTCTGAGCATTCCGGTTGTTGGGCCCCTTGCATCAGCTGAG
GTTCATGTCTGATTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTG
CTGATGCAAAGGCTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCAT
ATCCGTGTTCAGCAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGG
GTTGAAGAAAGAATTTAGTTACAACAAAATCCTCAAGGACCTCAAAAAGG
AATTTTGCTGCAATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTC
ATTCAACTCCAAGGTGACCAGCGGAAGAATGCATCTACGTTCCTTGTTCA
GGCTGGGATTGTGAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTAA
ACAGCAACTTCCGTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAG
TGCAGAACATGCTATTGATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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