CK937739

Overview
NameCK937739
Unique NameCK937739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937739_ssr8 microsatellite CK937739_ssr8:8..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:33..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.698e-114
Identity = 201/250 (80.40%), Postives = 218/250 (87.20%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAEL 788
            MGRKFFVGGNWKCNGT EEVKKI++ LN                 ++FL LVK+ LRPDFHVAAQNCW KKGGAFTGE+SAEMLVNL IPWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLE+RE+GSTMDVVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL AN SPE+AA+TRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+AE+
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEV 250          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 401.749 bits (1031), Expect = 2.295e-111
Identity = 199/250 (79.60%), Postives = 216/250 (86.40%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAEL 788
            M RKFFVGGNWKCNGT EEVKKIV+ LNE Q              ++FL LVKS+LR DF VAAQNCW KKGGAFTGE+SAEMLVNL IPWVILGHSERR ILNES+EFVGDKVAYAL+QGLKVIACVGETLE+REAGSTMDVVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  N S ++AA TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEV 250          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 400.979 bits (1029), Expect = 3.915e-111
Identity = 195/248 (78.63%), Postives = 213/248 (85.89%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 782
            MGRKFFVGGNWKCNGT ++V+KIV  LNEGQ              ++FL +VKS LR +FHVAAQNCW KKGGAFTGE+SAEMLVNLG+PWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +A
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAA 248          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.943e-110
Identity = 194/248 (78.23%), Postives = 214/248 (86.29%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 782
            MGRKFFVGGNWKCNGT EEVKKIV++LNE +              ++FL  VK+ LR DFHVAAQNCW KKGGAFTGE+SAEMLVNLGIPWVILGHSERR +LNESNEFVGDK AYALSQGLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW+  N   ++A + RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSA
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSA 248          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 394.045 bits (1011), Expect = 4.786e-109
Identity = 193/248 (77.82%), Postives = 212/248 (85.48%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 782
            MGRKFFVGGNWKCNGT ++V KIV +LNEGQ              ++FL +VKS LRP+  VAAQNCW KKGGAFTGE+SAEMLVNL IPWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLEQRE+GSTMDVVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKWL AN S E+A +TRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SA
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSA 248          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 381.333 bits (978), Expect = 3.210e-105
Identity = 186/248 (75.00%), Postives = 208/248 (83.87%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 782
            MGRKFFVGGNWKCNGT  +V+ IV+ LN GQ              ++FL  VK  LRP+  VAAQNCW KKGGAFTGE+SAEMLVNLGIPWVILGHSERR +L ES+EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTM+VVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +A
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAA 248          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 377.481 bits (968), Expect = 4.635e-104
Identity = 185/248 (74.60%), Postives = 206/248 (83.06%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 782
            MGRKFFVGGNWKCNGT E+V+ IV  LN GQ              ++FL +VK+ LRP+  VAAQNCW KKGGAFTGE+SAEML NLG+PWVILGHSERR +L ES+EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTM+VVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAA 248          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.225e-89
Identity = 158/189 (83.60%), Postives = 175/189 (92.59%), Query Frame = 3
Query:  222 VAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAEL 788
            VAAQNCW KKGGAFTGE+SAEML NLG+PWVILGHSERR +LNE+NEFVGDKVAYALSQGLKVIACVGETLEQREAG+TM+VVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW   N S E++A+TRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEV 191          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.088e-84
Identity = 160/249 (64.26%), Postives = 178/249 (71.49%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 779
            MGRKFFVGGNWKCNGT E V KIV  LNE                ++FL    + L+ +  VAAQNCW KKGGAFTGE+SA+ML NLGI WVILGHSERR +L ESNEFVG K AYA S+GL VIAC+GE LE+REAG T DV   Q K+ A      W N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINS 249          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.451e-81
Identity = 152/245 (62.04%), Postives = 176/245 (71.84%), Query Frame = 3
Query:   48 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 779
            KFFVGGNWKCNGT E + K+VS LN                 F+++  VKSSL     ++AQNCW  KGGAFTGEIS E L +LG  WVILGHSERR ++ E NEF+G K AYAL+QG+ VIAC+GE LE+REAG T DV   Q KA AD + SW N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG NC ELA Q D+DGFLVGGASLK PEF  I+ S
Sbjct:   72 KFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPP--FVYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 314          
The following BLAST results are available for this feature:
BLAST of CK937739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY1.698e-11480.40Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH2.295e-11179.60Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE3.915e-11178.63Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_COPJA1.943e-11078.23Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYSJ4.786e-10977.82Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE3.210e-10575.00Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU4.635e-10474.60Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA3.225e-8983.60Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP9.088e-8464.26Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL1.451e-8162.04Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937739 ID=CK937739; Name=CK937739; organism=Citrus sinensis; type=EST; length=789bp
GGGGATAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAG
TTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAA
AAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCG
TTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGT
TCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGCCAAGAA
GGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGG
GTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAAT
GAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGG
TTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAG
GATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGA
GTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTAT
TGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTG
AACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCA
ACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATT
GGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGA
AGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGA
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