CK937736

Overview
NameCK937736
Unique NameCK937736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937736_ssr744 microsatellite CK937736_ssr744:744..759. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1275 contig Csv1_Contig1275:944..1760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.457e-103
Identity = 171/225 (76.00%), Postives = 198/225 (88.00%), Query Frame = 1
Query:   19 NNKWVEPRKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVD 693
            NN+WVEP KFFRE MLK+GT+MPMPDI+DKMP+RSFLPR I SKLPFS+S +  LK+IFHA + S +E +I DALSECER PS GETKRC+ SAEDMIDFATSVLG +V +RTT++ +GS  NIMIGSVKGINGGKVT+SVSCHQ L+PYLLYYCHSVPKVRVYEAD+LDP +K KINHGVAICH+DTS+W  +HGAF+ALGSGPG+IEVCHWIFEND+TW I D
Sbjct:  406 NNRWVEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPNSKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 630          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.548e-102
Identity = 168/225 (74.67%), Postives = 198/225 (88.00%), Query Frame = 1
Query:   19 NNKWVEPRKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVD 693
            NN+W+EP KFFRE MLK+GT+MPMPDI+DKMP+RSFLPRAI +KLPFS+S ++ LK+IFHA+ +S +  +I DALSECER PS GETK+C+ SAEDMIDFATSVLG +V +RTT+N  GSK NIMIGS+KGINGGKVT+SVSCHQ L+P LLYYCHSVPKVRVYEAD+LDP +KAKINHGVAICH+DTS+W   HGAF+ALGSGPG+IEVCHWIFEND+TW   D
Sbjct:  405 NNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTWATAD 629          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 4.634e-102
Identity = 168/225 (74.67%), Postives = 198/225 (88.00%), Query Frame = 1
Query:   19 NNKWVEPRKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVD 693
            NN+W+EP KFFRE MLK+GT+MPMPDI+DKMP+RSFLPRAI +KLPFS+S ++ LK+IFHA+ +S +  +I DALSECER PS GETK+C+ SAEDMIDFATSVLG +V +RTT+N  GSK NIMIGS+KGINGGKVT+SVSCHQ L+P LLYYCHSVPKVRVYEAD+LDP +KAKINHGVAICH+DTS+W   HGAF+ALGSGPG+IEVCHWIFEND+TW   D
Sbjct:  408 NNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTWATAD 632          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 365.155 bits (936), Expect = 2.543e-100
Identity = 167/224 (74.55%), Postives = 196/224 (87.50%), Query Frame = 1
Query:   22 NKWVEPRKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVD 693
            NKWVEP KFFRESMLK GT++ MPDI+DKMP+RSFLPR+IVSKLPFS+S +  +K +FHA++NS+ME II DA+ ECER P+  ETKRC+GSAEDMIDFATSVLG SV LRTT++V GSK+ +MIG V GINGG+VT+SVSCHQ L+PYLLYYCHSVPKVRVYE+DLLDPK+KAKINHG+AICH+DTSAW   HGAF+ LGS PG+IEVCHWIFEND+ W I D
Sbjct:  399 NKWVEPGKFFRESMLKEGTLIWMPDIKDKMPKRSFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEGIITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPKSKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNWAIAD 622          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 362.844 bits (930), Expect = 1.262e-99
Identity = 166/224 (74.11%), Postives = 195/224 (87.05%), Query Frame = 1
Query:   22 NKWVEPRKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVD 693
            NKW+EP KFFRES LK GTV+PMPDI+DKMP+RSFLPR+I++KLPFS+S +  +K IFHA ENS+M  II DA++ECER PS GETKRC+GSAEDMIDFATSVLG SV LRTT+NV GSK+ ++IG V GINGGK+T++VSCHQ L+PYLLYYCHSVPKVRVYEADLL+  +K KINHG+AICH+DTS+W  +HGAFLALGS PGRIEVCHWIFEND+ W I D
Sbjct:  403 NKWIEPGKFFRESSLKEGTVIPMPDIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGGIITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNWAIAD 626          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 5.861e-97
Identity = 165/224 (73.66%), Postives = 189/224 (84.38%), Query Frame = 1
Query:   22 NKWVEPRKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVD 693
            NKWVE  KFFRE+MLK GT+M MPDI+DKMP+R+FLPR IV  LPFSSS +  +  +F A ENSSM  II  A+SECER  S GETKRC+GSAEDMIDFATSVLG  V +RTT+NV GSK+ ++IG V GINGG VT++VSCHQ L+PYLLYYCHSVP+VRVYE DLLDPK+  KINHGVAICHIDTSAWS +HGAFLALGSGPG+IEVCHWIFEND+TW I+D
Sbjct:  401 NKWVEEGKFFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTWNIID 624          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 4.666e-78
Identity = 134/231 (58.01%), Postives = 171/231 (74.03%), Query Frame = 1
Query:    4 SVNNNNNKWV-EPRKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVD 693
            S  + + KW  EP KFFRE+ L +G  MPMPDI+DKMP R+FLPR I  K+PF     N + E+F    +++M   +   ++ECER PS+GETKRC  SAED++DFA  +LGN + +R+T +  GS   I +G+V G++GGKVT+SVSCHQ LFPYL+YYCHSVPKVRVYEAD++   +  KINHGVAICH+DTS WS THGAF+ALG  PG +EVCHWIFE D+TWT+ D
Sbjct:  400 SSGHQHLKWSPEPGKFFRETELVSGNTMPMPDIKDKMPPRAFLPRDIAKKIPFKP---NAVSEVFGVPLDTAMGKAVTSTVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTWTVAD 627          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.753e-69
Identity = 121/229 (52.84%), Postives = 166/229 (72.49%), Query Frame = 1
Query:   16 NNNKWVEPRKFFRESMLKTGTVMPMPDIRDKMP--QRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVDR 696
            + N  ++P  FFRE  LK G V+ MPDI +++   + SFLPR+I  ++PF +  V   K +F    N+++   + + +++C+  PSKGETKRC+ SAEDMIDFA ++LG+ + +R+T    G  ++IMIG VKGINGGK+T SVSCH+ LFPY++YYCHSVPK+RVYEA++L  +TK KIN GVAICHIDTSAW+  H AF+ALG  PG+ +VCHWIF   +TW I D+
Sbjct:  118 HTNITIKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAV---KSLFGLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGESIMIGKVKGINGGKITSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIADK 343          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.183e-61
Identity = 112/203 (55.17%), Postives = 145/203 (71.43%), Query Frame = 1
Query:   34 EPRKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGIN-GGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGR 639
            EP KFFRE  L  G  MPMPDI D+ P R+FLPR I +K+PF ++ V+ L   F A+  ++M  ++   ++EC R PS+GETKRC  SAED++DFA  +LG++V  R T++  G   ++ +G V G+  GG VT+SVSCHQ LFPYL+YYCHSVP VRVYEAD+L   +  KINHGVAICH+DTS WS  HGAF+ALG  PG+
Sbjct:  473 EPGKFFRERDLVAGNRMPMPDIADRTPPRAFLPRDIAAKIPFDAAAVSAL---FGAAPGTAMRQVVSSTVAECARPPSRGETKRCATSAEDVVDFAVEMLGDNVVARATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVYEADILAVDSNQKINHGVAICHLDTSDWSPNHGAFIALGGKPGK 672          
BLAST of CK937736 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.687e-25
Identity = 67/218 (30.73%), Postives = 104/218 (47.71%), Query Frame = 1
Query:   46 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGN-----SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQRLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWT 684
            FF E+ L++   + +    + M    FLPR     +PFSS ++  +   F     S   S++K+ L ECE   +KGE K C  S E M+DF  S LG      + T    ++     Q   +   + +   +  Q ++CH   +PY ++ CH     R Y+A L+     A     VA+CH DT+ W+  H AF  LG  PG + VCH++  + + WT
Sbjct:  109 FFLETNLQSSKSIKL-HFANMMAGTKFLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTRDIKAASTFLVGKDGDTPAQEYTVTGARRM--AETGQLIACHPESYPYAVFMCHLTEATRAYKASLVGKDGAAV--EAVAVCHTDTAEWNPKHAAFQVLGVKPGTVPVCHFVQPDVVVWT 321          
The following BLAST results are available for this feature:
BLAST of CK937736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GP1_SOLLC2.457e-10376.00Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
GP2_SOLLC3.548e-10274.67Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP3_SOLLC4.634e-10274.67Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
JP630_ARATH2.543e-10074.55Probable polygalacturonase non-catalytic subunit J... [more]
JP650_ARATH1.262e-9974.11Probable polygalacturonase non-catalytic subunit J... [more]
Y639_ARATH5.861e-9773.66Probable polygalacturonase non-catalytic subunit A... [more]
BURPC_ORYSJ4.666e-7858.01BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPG_ORYSJ6.753e-6952.84BURP domain-containing protein 16 OS=Oryza sativa ... [more]
BURPE_ORYSJ5.183e-6155.17BURP domain-containing protein 14 OS=Oryza sativa ... [more]
BURP5_ORYSJ2.687e-2530.73BURP domain-containing protein 5 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937736 ID=CK937736; Name=CK937736; organism=Citrus sinensis; type=EST; length=816bp
GGGTCGGTGAATAACAATAATAATAAATGGGTGGAGCCGAGGAAGTTCTT
CCGCGAGTCTATGCTGAAGACGGGAACTGTGATGCCAATGCCTGACATTC
GAGATAAAATGCCTCAAAGGTCGTTTCTGCCCCGGGCTATCGTTTCCAAG
TTACCATTTTCGAGTTCCAATGTAAACGTACTCAAGGAAATATTCCATGC
AAGTGAAAATTCTAGCATGGAGAGCATAATCAAGGATGCGTTGAGTGAGT
GTGAGCGGCAACCAAGCAAGGGCGAGACCAAACGGTGCATTGGCTCAGCC
GAGGATATGATTGACTTCGCCACCTCAGTACTCGGAAACAGCGTGACTCT
TCGTACAACTCAGAACGTGCAAGGGTCAAAGCAGAACATTATGATTGGTT
CAGTGAAGGGAATCAACGGTGGCAAAGTCACCCAATCTGTCTCTTGTCAC
CAAAGATTGTTTCCATATTTGCTATACTACTGCCACTCCGTTCCAAAAGT
GAGGGTGTATGAAGCTGATTTATTGGATCCCAAAACCAAGGCTAAAATCA
ATCACGGTGTTGCCATCTGTCACATCGATACGTCTGCTTGGAGCCAGACT
CATGGAGCATTCTTGGCTTTGGGTTCGGGTCCAGGGCGGATCGAAGTTTG
TCACTGGATTTTCGAGAATGATTTGACTTGGACCATTGTTGATCGTATGG
TTTAGCTAGCCGTTTTAATTCATTATTTGGCTATAAGTTGTATTAGCTAG
CTAGCTAGCTATGCGATTTGCTTCCAGCTCAGTGTGTTTGTGTGATTAAG
TTCACACGCTTGTTCT
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