CK937733

Overview
NameCK937733
Unique NameCK937733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6127 contig Csv1_Contig6127:66..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937733 vs. ExPASy Swiss-Prot
Match: U420_DICDI (UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.909e-34
Identity = 75/201 (37.31%), Postives = 116/201 (57.71%), Query Frame = 3
Query:   30 GXSEVAKSKQQLIIEEWNGSSSTKLFKTATIFAS--PSLSIHRSGSRFTHVWSRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPS-AFAFVVCLGSLSRSFTGVASGATRAALTQHF 623
            G S+ + +K   IIE+   +S    F+ A+ +      L+   +  + +  ++ + + F+P G+P SVT DY  +Q WDS+Q L + I   L+T+A+L   GVG+ SATV  AT QW +RD  GM+G ++F + +G++LD N+K WR  A             SPLF S  F  + C+G +++S  GVA G T+A+LTQHF
Sbjct:    5 GKSQQSINKINCIIEKNQSNSIINKFQVASPYDDYDDRLNFLETIEKNSGFYNVLCELFLPNGYPDSVTTDYFGYQFWDSIQALCSTITGTLATRAILKGYGVGDSSATVASATTQWLIRDGMGMIGRIVFAWRKGTDLDCNSKKWRYTADILNNIGMAFEMISPLFSSQLFLPLSCIGLIAKSICGVAGGCTKASLTQHF 205          

HSP 2 Score: 31.187 bits (69), Expect = 2.909e-34
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 1
Query:  622 FALQNNAADISAKEGSQETNGN 687
            FA ++N AD+SAK+GSQET  N
Sbjct:  205 FAKRDNLADVSAKDGSQETAVN 226          
BLAST of CK937733 vs. ExPASy Swiss-Prot
Match: CP058_HUMAN (UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.913e-34
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 3
Query:  189 LQA-FVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQH 620
            LQA F+P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  IGVG   ATV  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++    VA GATRAALT H
Sbjct:   73 LQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVH 217          

HSP 2 Score: 28.1054 bits (61), Expect = 2.913e-34
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  625 ALQNNAADISAKEGSQET 678
            A +NN AD+SAK+ SQET
Sbjct:  219 ARRNNMADVSAKDSSQET 236          
BLAST of CK937733 vs. ExPASy Swiss-Prot
Match: CP058_PONAB (UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.795e-34
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 3
Query:  189 LQA-FVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQH 620
            LQA F+P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  IGVG   ATV  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++    VA GATRAALT H
Sbjct:   73 LQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASGLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVH 217          

HSP 2 Score: 28.1054 bits (61), Expect = 3.795e-34
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  625 ALQNNAADISAKEGSQET 678
            A +NN AD+SAK+ SQET
Sbjct:  219 ARRNNMADVSAKDSSQET 236          
BLAST of CK937733 vs. ExPASy Swiss-Prot
Match: CP058_MOUSE (UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.412e-33
Identity = 63/147 (42.86%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  180 SRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQH 620
            S +    +P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  +GVG   A+V  AT  W ++D TGMLG ++  +++GS LD NAK WRL A             +P++P  F   V   +L++   GVA GATRAALT H
Sbjct:   69 SGLRSVLLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMH 215          

HSP 2 Score: 28.1054 bits (61), Expect = 2.412e-33
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  625 ALQNNAADISAKEGSQET 678
            A +NN AD+SAK+ SQET
Sbjct:  217 ARRNNMADVSAKDSSQET 234          
BLAST of CK937733 vs. ExPASy Swiss-Prot
Match: CP058_RAT (UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.092e-33
Identity = 63/147 (42.86%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  180 SRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQH 620
            S +    +P+GFP SV+PDY+ +Q+WDS+Q  ++ +   L+TQA+L  +GVG   A+V  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++   GVA GATRAALT H
Sbjct:   69 SGLRSVLLPQGFPDSVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIIFAWWKGSKLDCNAKQWRLFADILNDTAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMH 215          

HSP 2 Score: 28.1054 bits (61), Expect = 4.092e-33
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  625 ALQNNAADISAKEGSQET 678
            A +NN AD+SAK+ SQET
Sbjct:  217 ARRNNMADVSAKDSSQET 234          
The following BLAST results are available for this feature:
BLAST of CK937733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U420_DICDI2.909e-3437.31UPF0420 protein OS=Dictyostelium discoideum GN=DDB... [more]
CP058_HUMAN2.913e-3446.90UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf... [more]
CP058_PONAB3.795e-3446.90UPF0420 protein C16orf58 homolog OS=Pongo abelii P... [more]
CP058_MOUSE2.412e-3342.86UPF0420 protein C16orf58 homolog OS=Mus musculus P... [more]
CP058_RAT4.092e-3342.86UPF0420 protein C16orf58 homolog OS=Rattus norvegi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004482_F08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937733 ID=CK937733; Name=CK937733; organism=Citrus sinensis; type=EST; length=735bp
NCGGGGAATCAATTTCCATTTTAATGGAAGGNNNAAGTGAAGTAGCAAAA
TCAAAGCAACAGCTGATAATCGAAGAATGGAATGGATCATCTTCAACCAA
GCTCTTCAAAACCGCTACAATTTTCGCATCTCCGTCTCTCTCCATTCACA
GATCCGGTAGTCGTTTTACGCATGTCTGGAGCCGAGTTCTCCAAGCTTTT
GTACCTGAGGGTTTTCCTGGCAGTGTGACTCCAGATTATGTCCCATTTCA
AGTATGGGATTCTTTGCAGGGCCTTTCGACATACATTAGGACCATGCTTT
CTACTCAAGCTCTTTTGAGTGCCATTGGCGTTGGTGAGAAATCAGCTACT
GTTATCGGTGCAACATTTCAGTGGTTTTTGAGGGATCTTACTGGAATGCT
TGGAGGTGTCTTGTTCACATTTTATCAGGGCTCAAATCTGGATAGCAATG
CTAAAATGTGGCGTCTGGTCGCAGATCTTATGAATGATCTTGGGATGTTG
ATGGACCTTCTTTCCCCTTTGTTTCCTTCAGCTTTTGCATTTGTTGTTTG
CTTAGGGAGCTTATCAAGATCATTCACTGGTGTTGCAAGTGGAGCTACTA
GAGCTGCTTTGACACAGCATTTTTGCCCTCCAGAATAATGCTGCTGATAT
ATCTGCCAAGGAAGGGAGCCAAGAGACAAATGGCAACAANNATTTGNNAT
GGCTCTGGGGATGCTTTCTTGCTCCCATTACAATG
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